Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01129 ATGTATTTAGTGGAGAGTAAAGAAGGAGCAATAGCATGTATGGTATTGTCCCTCTTTTTTCTGGGGACTTTTCCTGCACTTCTGACTCTTCAAGAACGGCGAGGGCGTCTCCCTCAGCATACTTTCCTTGATTACTCGATCACAAATTATTTAGCTGCTGTGATCTTTGCTTTGACACTTGGTCAGTTTGGAAATAGCTCACCAGATACTCCAAATTTCATCCAACAGCTTTCTCAGGTGCAGGATAACTGGCCTTCGGTCATGTTTACGTTGGCCGGTGGAGTAGCGTTGAGTATCGGCAATCTTTCCTCTCAATATGCTTGGCCCTTTGTTGGTTTATCAGTTACAGAAGTGCTCGTTTGCAGCATAATAGTAGTTATAGGCTCAACCTTGAACTACTTTCTTGATGGCAAAATTAATAGAGCCGAGATTCTTTTCCCCGGTGTTGCGTGCTTTGTGATCGCAGTATTTCTTGGCTGTGCTGCTCACTTGTCCAACTCGGCCGATAACGAAGCAAAGCTGGAACACTTGTCTGCTGATTCAGAAAAAGAGGCAGTTGAAACCTCTCCTATTTTGAGCCATGACATGGAGAGTGCCGATTGTTCGAGCCGAGGTGCAGAAGCTGGGACTGCAGACTTTCTTATTCAACTAGAAAGCAGAAGATCCATCAAGGTGTCTGGAAGAAGCACACTAATAGGACTGTTCATAACTTTCTTTGCTGGTGTTTCCCTTTCTCTCTTCTCACCTGCATTCAATTTGGCCACAAACGATCAATGGCACACTCTGAAGGAAGGCATCCCACGCTTGTCGGTCTATACCTCATTTTTCTATTTCTCGACCTCTTTTTTCGTCTTAGCCTTCGTTCTTAACGTCGTCTTCCTTTACCGCCCTATGCTGAACTTACCCAAGACATCATTCAAGGCATATCTGAATGATTGGAATGGTAGGGGTTGGACCTTTTTGGCTGGTTTTTTGTGTGGATTTGGCAATGGTTTGCAGTTCATGAGCGGTCAAGCTGCTGGATATGCTGCAGCAGATTCTGTGGAGGCCTTTCCACTTATAAGCACGTTTTGGGGAATTGTTCTGTTCGGAGAATACCGTAGATCTTCAAGAAAAACATACGTTTTGCTTGTCGGCATGTTGTTTATGTTTACGGTGGCTGTGGTGGTTCTAATGGCTTCATCAGGGAATGGACATGAGAGAGGCGTTAGAAAATCTTGTCAAACCTCAACCCTTTGTGCTGATTAG 1248 44.55 MYLVESKEGAIACMVLSLFFLGTFPALLTLQERRGRLPQHTFLDYSITNYLAAVIFALTLGQFGNSSPDTPNFIQQLSQVQDNWPSVMFTLAGGVALSIGNLSSQYAWPFVGLSVTEVLVCSIIVVIGSTLNYFLDGKINRAEILFPGVACFVIAVFLGCAAHLSNSADNEAKLEHLSADSEKEAVETSPILSHDMESADCSSRGAEAGTADFLIQLESRRSIKVSGRSTLIGLFITFFAGVSLSLFSPAFNLATNDQWHTLKEGIPRLSVYTSFFYFSTSFFVLAFVLNVVFLYRPMLNLPKTSFKAYLNDWNGRGWTFLAGFLCGFGNGLQFMSGQAAGYAAADSVEAFPLISTFWGIVLFGEYRRSSRKTYVLLVGMLFMFTVAVVVLMASSGNGHERGVRKSCQTSTLCAD 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11619723 11622972 - CmoCh18G011290.1 Cmo18g01129 402902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01129 415 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 1 403 IPR030189 GO:0016021|GO:0022857|GO:0071705
Cmo18g01129 415 Pfam Ureide permease 41 394 IPR009834 GO:0016021|GO:0071705
Cmo18g01129 415 PANTHER BNAC09G21970D PROTEIN 1 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01129 - - - csv:101220570 625.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01786 Cmo18g01129 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01786 Cmo-Chr4:8978820 Cmo18g01129 Cmo-Chr18:11619723 0 dispersed
Cmo17g01244 Cmo-Chr17:9864288 Cmo18g01129 Cmo-Chr18:11619723 0 dispersed
Cmo18g01128 Cmo-Chr18:11613354 Cmo18g01129 Cmo-Chr18:11619723 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g43 . . . . . Bpe10g00898 . Bma15g00133 Cmo04g01786 Cmo18g01129 . Cma18g01107 . Car18g01021 . Cpe09g00220 Cpe01g01505 Bhi07g01495 Tan04g1007 . Lac13g0373 Hepe10g1793 . . Cla05g02393 . . Cco05g2641 Clacu05g2568 Cmu05g2425 Cre05g2542 Cone13ag0908 . Cone6ag0529 . Lsi04g00364 Csa05g02510 Chy10g01057 Cme10g00358 . . . . . . . . . . . Cma04g01700 . Car04g01737 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000563 1 11 1 1 1 3 3 2 3 2 2 3 5 3 3 5 3 1 3 3 4 1 1 6 4 3 3 10 16 1 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01129 Cmo_Chr18 FPKM 0.367999 0.080534 0.0 0.201541 0.516272 1.096326 1.04284 0.708258 1.036682 1.275973