Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01134 ATGCTTTATGCTCTGCTTCGAGATTTAAACAGAAGGCGCTTCCCATTTAGAGTGGTTCTGAACTGGATTATTGAAGGTACTTCAGAAATATTGGACATGAGAAGCTCCTGGGTTAATAAAATATCTGTAATCTTGGGCTCCAAACCACCATTCAACTGGTTAATCTTGTGTCTCATCAGCGTGCTTGCATTAATTGTAGTTCTAGGAACGTCTACTTCAAATGTCTTTGATTCAGTTTCTACCACGCCAGTGTCTGACATTTATACTAGTTATAGAAGGCAAAAAGAAAGGGCCGCAATTGATTTGTTTGACTTAAAGTCTCTTTCATTAGCCACGGGTCGACTCAAAGAGTTTGGTCTTTGTGGAAAAGAAAGAGAAAACCATGTGCCATGTTACAATGTTACAGCAAATACGTTAGCTGGATACAAAGAAGGGGAGGAGTATGATAGGCACTGTGAAGTGTCTAGAACAGCAGAGCGTTGCCTGGTTCGTCCTCCTAAAGACTACAAGATCCCTCTGAGTTGGCCTGTTGGTAGGGATATAATATGGAGTGGGAATTTGAAGGTAACAAAAGATCAACTTCTGTCTTCTGGGAGCCCTACCAAAAGGTTGATGTTATTAGAAGAGAACCAAATTTCTTTTCACTCGGAGGATGGTGATGGAGTCAAAGAGTATTCCTTTCAAATCGCAGAGATGATTGGTTTAGGCACTGACTCTGAATTTCTTCAAGCTGGTGTACGCTCGATACTTGATATTGGTTGTGGGTTTGGTAGCTTTGGTGCTCATTTAACATCAATGAATGTAATGGTTATGTGCATTGCGACCTATGAGGCGACTGGCAGTCAAGTTCAAATGGCTCTAGAGAGAGGCCTTCCAGCGATGCTTGGCAACTTTATTACAAAACAGCTTCCATATCCATCCTTGTCATTTGACATGGTTCACTGTGCACAATGTGAAATCTCTTGGAACGATAAAGGTGGGATATTCCTTATTGAAGCCGACCGGTTGCTAAGACCTGGAGGTTATTTTGTTTTAACCTCTCCCACAAGCAAGGCAGTCGGTGGTTCATTGTCTTCCAAGAAGATAAGCATTTTGACACCACTGGAAGAGATTACCCGAAGATTATGTTGGACTTTTTTAGCTCAGCAGTATGAAACTTATATTTGGCAGAAAACTACAGATCCTCGTTGCTATTTATCTGGCAAGCAGGAAATTGTACCACTTTGTAAAGAAGGGCATGATACTCCATCATATTATCAACCTCTGGTACCATGCCTAAGTAGTACTACCAGCAAGCGGTGGATTCCAATCCAGAACAGGTCTTCCAGTTCTCGCGTTCAATCAGATGACTACGCTGATGACTTACAAATTTGGCGAACGGCTTTGAAAAACTATTGGTCCTTACTTACGCCTTTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTACCTCCATTTAACATGATACGCAATGTGATGGACATGAATGCTCATTATGGGGGTTTAAATGCTGCGTTTGTGGAGCAAAAGAAAACGGTTTGGGTCATGAATGTTGTGCCTGTTGGATCTCCTAATACGCTTCCCCTCATACTTGATCAAGGTTTTGCTGGTGTTCTGCACGATTGGTGTGAACCTTTCCCCACTTATCCACGAACATATGATTTGCTCCATGCAAATGGGCTCCTCTCACAGCTACTTTCAAGTAGGTGCAGCATGCTTGAATTTTTAGTTGAGATGGACCGTATACTGCGCCCTGAGGGATGGGTTATTCTAAATGACAAAGTGGGACCGATAGAGAAGGCGCGAATGCTTGTTACACATATTCGTTGGGAGGCAAGGGTGATCGACTTTCAGAATGGCAGCGACCAAAGGCTCCTTGTTTGCCAGAAACCATTCGTGAAAAAATGA 1920 42.55 MLYALLRDLNRRRFPFRVVLNWIIEGTSEILDMRSSWVNKISVILGSKPPFNWLILCLISVLALIVVLGTSTSNVFDSVSTTPVSDIYTSYRRQKERAAIDLFDLKSLSLATGRLKEFGLCGKERENHVPCYNVTANTLAGYKEGEEYDRHCEVSRTAERCLVRPPKDYKIPLSWPVGRDIIWSGNLKVTKDQLLSSGSPTKRLMLLEENQISFHSEDGDGVKEYSFQIAEMIGLGTDSEFLQAGVRSILDIGCGFGSFGAHLTSMNVMVMCIATYEATGSQVQMALERGLPAMLGNFITKQLPYPSLSFDMVHCAQCEISWNDKGGIFLIEADRLLRPGGYFVLTSPTSKAVGGSLSSKKISILTPLEEITRRLCWTFLAQQYETYIWQKTTDPRCYLSGKQEIVPLCKEGHDTPSYYQPLVPCLSSTTSKRWIPIQNRSSSSRVQSDDYADDLQIWRTALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEQKKTVWVMNVVPVGSPNTLPLILDQGFAGVLHDWCEPFPTYPRTYDLLHANGLLSQLLSSRCSMLEFLVEMDRILRPEGWVILNDKVGPIEKARMLVTHIRWEARVIDFQNGSDQRLLVCQKPFVKK 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11638090 11642472 - CmoCh18G011340.1 Cmo18g01134 402907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01134 639 Gene3D Vaccinia Virus protein VP39 228 392 IPR029063 -
Cmo18g01134 639 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 167 351 IPR029063 -
Cmo18g01134 639 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 33 638 IPR004159 GO:0008168
Cmo18g01134 639 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 127 634 IPR004159 GO:0008168
Cmo18g01134 639 PANTHER METHYLTRANSFERASE PMT4-RELATED 33 638 - -
Cmo18g01134 639 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 490 619 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01134 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101213009 1210.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01656 Cmo-Chr1:12536612 Cmo18g01134 Cmo-Chr18:11638090 0 dispersed
Cmo05g00528 Cmo-Chr5:2546248 Cmo18g01134 Cmo-Chr18:11638090 0 dispersed
Cmo09g00551 Cmo-Chr9:2622064 Cmo18g01134 Cmo-Chr18:11638090 0 dispersed
Cmo18g01134 Cmo-Chr18:11638090 Cmo08g01055 Cmo-Chr8:6817104 6.78E-104 dispersed
Cmo18g01134 Cmo-Chr18:11638090 Cmo04g01781 Cmo-Chr4:8961609 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g66 . . Bda01g02130 . . . Bma14g01641 . . Cmo18g01134 . Cma18g01112 . Car18g01026 Sed06g1770 . . Bhi07g01503 Tan04g1016 Cmetu03g1484 . . . . . . . . . . . . . . . . Csa05g02505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004930 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01134 Cmo_Chr18 FPKM 23.288399 21.296633 60.700199 62.118389 8.551197 7.350924 9.384873 28.972281 34.762302 32.387665