Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01144 ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCGGGAGCTTCCAAGACTTTTCCGCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATAGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACGGGAAAGCATGGACATGCTAAATGCCACTTTGTTGCCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCCTCTTCACACAACTGTGATGTTCCCCATGTCAACCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCATCGGATGAGAGTCTGCTGTCCCAGATCAAGGATGGCTTTGCGGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATTGGCCCAAAATAG 480 49.38 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFISLLTDSGNTKDDLRLPSDESLLSQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11697801 11700781 + CmoCh18G011440.1 Cmo18g01144 402917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01144 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cmo18g01144 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo18g01144 159 Gene3D - 1 85 IPR014722 -
Cmo18g01144 159 CDD S1_eIF5A 86 156 - -
Cmo18g01144 159 Gene3D - 86 158 IPR012340 -
Cmo18g01144 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cmo18g01144 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo18g01144 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cmo18g01144 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo18g01144 159 MobiDBLite consensus disorder prediction 1 21 - -
Cmo18g01144 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo18g01144 159 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo18g01144 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00354 Cmo-Chr5:1586049 Cmo18g01144 Cmo-Chr18:11697801 2.34E-108 dispersed
Cmo09g00416 Cmo-Chr9:1817752 Cmo18g01144 Cmo-Chr18:11697801 3.35E-105 dispersed
Cmo10g00501 Cmo-Chr10:2234753 Cmo18g01144 Cmo-Chr18:11697801 1.53E-72 dispersed
Cmo11g00460 Cmo-Chr11:2245677 Cmo18g01144 Cmo-Chr18:11697801 2.49E-109 dispersed
Cmo18g01144 Cmo-Chr18:11697801 Cmo04g01767 Cmo-Chr4:8915488 1.86E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01144 K03263 K02180 mnt:21396395 315.464