Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01145 ATGGGTGACGATGAAGATAAGCTGCCACCGTCGTCGGTGCCGTCGCCGTTGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTCCCGCCACGGACCTCTATGGAGTCGCTCTTAAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCAGGGCCCATGACCCTTGTCTCGAGCTTCTTCTCCGATTCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGCGCTATGACGTCGCCGGTGGCTGTTCCTCCGACGGCGTCCGAGCTCAAGGACTCTGCTGGTCTGCCCGATTCTCCGGGGCTTTTCTCGCCTGATCAGGGAACTTTTGGATTGACCCATCAGCAGGCTTTGGCTCAGGTTACCATGCAGGCTGTAGAAGCCTATTCTCATAAGCAAATACAAGCACACTCAGTAGCAGGCTCTGCAGCCTCCTCAAAGCTTTTGACCGTATTTCCGAGCGAGAAGGCTAAAGATCAGCCAGTGCCACTTCAATTGCTGAACTCTGCTGTCGTGTCGAAGGAGTCGTCCGATATCTCTCAATCCGATCAGAGATCGGTATCTTCTTCGTGTAATGTCGATAGGCCTGCTGATGATGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGTACCTGAATTGTCCTGTCAAGAAAAAGGTCGAACGATCTCTGGAAGGCCACGTTACTGAAATTATTTATAAGGGTGAACACAACCACGAACGACCTCAACCGAACAAGCGTGCAAAGGATGTTGGAAATTCTAATGGATATTCAAGTGTTCATGGAAACACTGACCTATATTCTCAAGTAAAGAGTGGATATTTGAATAAGTTGAATGAGCAGTCAGCTGTGTCTTCCGTTGTGAAGAAGGATCGAGAATCGAACCTCGTTACACATGGACAGTCGTTGGATGCTAGTGACAGTGAGGGAGGGGGTGAGGTAGAAACTGGACCGAATAGAAACGATGAAGACGAACCGGATGCCAAGAGACGGAACACCGAGGCTCGGATCGAGCCAGTGTCTTCTCATAGGACGCTCACGGAATCCCGAATCATTGTGCAGACTACAAGTGAAGTCGATTTGTTGGACGATGGCTACCGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGCAACCCTTACCCCAGGAGCTATTACAAATGCACGACTCACGGATGCAATGTTCGTAAACACGTCGAGAGAGCTTCAACAGACCAGAAAGCTGTGATAACGACGTACGAGGGCAAACACAATCACGACGTTCCAGCTGGTAAAATCAGCAGCCACGGTACAGCCAACAGTAACGTTCCTCGCCTAAAATCACAAAATATAGGAAGGGATCTGTTGTTAATGTTGCCAAAAGCAGACAGGCCCTCCAGTAACTCCTCAGCTGTGGATGGTAACAAAGTAAAAAGAAGAAAGGAGAAGTGGTGGGAGGCCCCATGGATATACGATTTTGCTAAAAAAAATGGTGTAATGAAGAGGCAAAGGCTTAAAAGAAAGAAGGAACAGAATGGAATTGTTGATGGAATCGATTTTTTCTGTGGGAAAGGGGTTCGTAATCTGAAGCCCATCCTGTTCTTCGTGTTCTTCGTGTTCTTCTTCTGGGTGTCTCCAATGAGGAAGCATGGATGGCAACTTCCTTACCATCCTCTCCAGGTTGTTGCAGTTTCTGTGTTTCTAGCTCTGGGGTTTGCTTTTTATGTCTTCTTTGCTCCTTTTGTCGGGAACAAGATTTTTCAGTATGTTATGATTGGACTATATACTCCTCTTATTACATGTGTGTTTGGTCTATATATCTGGTGTGCGGTAGCTGACCCGGCAGACACTGGAGTGTTCAAATCCAAGAAGTATGTCGATGTTCCTGATGAAGGGAAGTGTTCTCAGCAAAAAAGTTCTAAACTCGGTGGCGAATCCACGCATGATCCCAATGCTGCTGCTTCTGTGGATAAAGATGCAAATTCAAAGGACAGCCCGGCATCAAAGAAGCTGTCATGTCTTTCGTTGGTGTGCTTCCCTTGTGCATATGTATGCAATTGTTCGGGTTCGAACGAGGAATCGTCCGACCAAAACATGAGTGAAGATGGCATGTTTTACTGCAGTTTGTGTGAAGTTGAGGTTTTCAAGTATAGCAAGCACTGCAGAGTTTGTGATAAGTTTATACATGGTTTGTGCACCTTGGGCTTGAGATTGCAGCTTATTGTACAATGGTCGAGTGGAATCCTTGTGCTCATCTGCTGTTTTGTCGAGAAGAAACGGTTCTCTGTGGAAATCTCCTCCAAGTTGGGTAGCAGTTTTTCTTTGGCACCTTTCATTATTGTAGTGTTTGATGTGATTCCACCAGAGACGGGGTCTGTTAGTTCGCTCGGAAAGAGGACGGTCAGCGAAGAAGCAACCAAGAAAAAGAACCCTGCTGCTGTGAGGATCAGTCCATGGACTCTGGCAAGACTAAATGGTGATGAGGTTTCAAAGGCTGCAGCAGAGGCAAGGAAGAAGTCCAAAATTCTACAGCCTGTGGTTAGATCAGCGACACCTTTTGAACGTGAACCGGATAGCGGTTTTGGCAGTAGTGGTCGCCGAATCGTTTCACGACTCGAAAATAATAGAAGGCGAGGGAATAAACGTGTGCGACTTCCATCTGATCTACCTATGCAACACTTAACAAATGTTCCAGGAAAAGCTGTTGAAAAAGGTTTCTCTGGCACATCAACTAGCCTTGGTCCTCTTCAGCTTGAAGCACGCAGTGCTTTCCAAACAAGCCGAGCAATGTCGAGCTCAACCATGGCTGCATCGTCACCGGAGAGCAGTTTGGGGTCGCCTGACATCCATCCGTTCAGAATATCCTCCTCAGGAGCTGAAGAGTCTAAGAGAGTCACTGGCGTATTAGCAGCTAATGTAGCTGCTGCTCAAAAGGGACTTCCATTGTCGAGGTCGACTAGTGATGGATATGAAGCTTCGGGCGGAGAGGACAGCGACCGAGTTCCTTCAAGGATTGTTCAAAGACCAACAAGCTGGAACAACCTCTTATCTGATCCTTCTGAATTTCCATTCGCCGCCCATTGCCGCTGCTTTTTCCGATGGGGTTCTTTCCCTTTCTGGTGGTTCTGTTGTTTTGGCGCCACCGGATTTAGGGTCTGGAAACTGGAAATGGAATTCTCTTCTTCCGTCGATTTTCCCGGAATCCATCGGGATACTCCTCCGACGGACGAGGAATGCCACGATTTGCGTTTGCTGACCGTGGCGTCAACAAAACCCTCTGAATCCGGGATCGAACCCGACAATCAATTCCATACGATGAGCGCGTTGGAGATCTTGAGGGAAACGGTTCGGATTCTCCGCTACAATTCTACTGCGTTTGTGGTTATTGCCATTTTGCTTATTTGCCCTGTTTCCGCCGTCTTTTTATCCAATGTGTTAATCGATGAGTCGACTGTCAAGATGCTGACTATCCGATTGGTATTAATAGCCAGGTCCAGTGGGCTCCCATTGATGCCCATGATCGAACATTCATGCCAGAGATTTGCCGAGTCGATTCTTTCCTCTGCAGTGTGCTTTCCTTTGTTCGTTACCTTTTCTTTGTTATCAAAAGCTGCTGTTGTTCATACGGTGGATTGTACACACGCCAAAAGAAGGTTCGAAGCAGGCCTGTTCCTCGCTTTAGTTCGTAATATATGGAATCGTCTTGTCACGACATATGTTTCTGTGTGTCTTGCGATTGTTGGGTGTCTTACAACGTTCTTGGTTCTGCTTGGTGCTGTTTGCAGTACTTTTTATGCATTGGGATTTTCGCCTGATCTTATTATATCTGTTGCTGTGATTGGGGGGCTTGTGTTCTCTGTTATATTTGCTAATGCTGTCATCATCTGCAACATTGGGATTGTTATCTGTGTATTGGAAGATGTTGCAGGGCCAGGGGCATTGCTTAGGTCGTGTGTTCTTATTAGGGGTCAAACTCAAGTGGGGCTTTTGATATTTCTGGGATCCACAATTGGGACAGTGTTTGTGGAGGGATTGTTTGAGCATAGGGTTAAGATACTGAGCTATGGAGATGGGTCTTCGAGGATTTGGGAAGGCCCTCTTTTGGTGGTTATGTATTCATTTGTTGTGCTTACTGATTCTGTGATGAATGCGGTTTTTTACTTCAGCTGCAGATCTTCAAGTATGGTGATATCAGACGATTCTGTTTCGGATGGATCAATTGGTATTCTTTCATTCGAATTGGATGATAGTTTCATAGACTGA 4290 46.85 MGDDEDKLPPSSVPSPLKSKAFPLRPTINLPPRTSMESLLSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMTSPVAVPPTASELKDSAGLPDSPGLFSPDQGTFGLTHQQALAQVTMQAVEAYSHKQIQAHSVAGSAASSKLLTVFPSEKAKDQPVPLQLLNSAVVSKESSDISQSDQRSVSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTYLNCPVKKKVERSLEGHVTEIIYKGEHNHERPQPNKRAKDVGNSNGYSSVHGNTDLYSQVKSGYLNKLNEQSAVSSVVKKDRESNLVTHGQSLDASDSEGGGEVETGPNRNDEDEPDAKRRNTEARIEPVSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTTHGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHGTANSNVPRLKSQNIGRDLLLMLPKADRPSSNSSAVDGNKVKRRKEKWWEAPWIYDFAKKNGVMKRQRLKRKKEQNGIVDGIDFFCGKGVRNLKPILFFVFFVFFFWVSPMRKHGWQLPYHPLQVVAVSVFLALGFAFYVFFAPFVGNKIFQYVMIGLYTPLITCVFGLYIWCAVADPADTGVFKSKKYVDVPDEGKCSQQKSSKLGGESTHDPNAAASVDKDANSKDSPASKKLSCLSLVCFPCAYVCNCSGSNEESSDQNMSEDGMFYCSLCEVEVFKYSKHCRVCDKFIHGLCTLGLRLQLIVQWSSGILVLICCFVEKKRFSVEISSKLGSSFSLAPFIIVVFDVIPPETGSVSSLGKRTVSEEATKKKNPAAVRISPWTLARLNGDEVSKAAAEARKKSKILQPVVRSATPFEREPDSGFGSSGRRIVSRLENNRRRGNKRVRLPSDLPMQHLTNVPGKAVEKGFSGTSTSLGPLQLEARSAFQTSRAMSSSTMAASSPESSLGSPDIHPFRISSSGAEESKRVTGVLAANVAAAQKGLPLSRSTSDGYEASGGEDSDRVPSRIVQRPTSWNNLLSDPSEFPFAAHCRCFFRWGSFPFWWFCCFGATGFRVWKLEMEFSSSVDFPGIHRDTPPTDEECHDLRLLTVASTKPSESGIEPDNQFHTMSALEILRETVRILRYNSTAFVVIAILLICPVSAVFLSNVLIDESTVKMLTIRLVLIARSSGLPLMPMIEHSCQRFAESILSSAVCFPLFVTFSLLSKAAVVHTVDCTHAKRRFEAGLFLALVRNIWNRLVTTYVSVCLAIVGCLTTFLVLLGAVCSTFYALGFSPDLIISVAVIGGLVFSVIFANAVIICNIGIVICVLEDVAGPGALLRSCVLIRGQTQVGLLIFLGSTIGTVFVEGLFEHRVKILSYGDGSSRIWEGPLLVVMYSFVVLTDSVMNAVFYFSCRSSSMVISDDSVSDGSIGILSFELDDSFID 1429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11701929 11716979 + CmoCh18G011450.1 Cmo18g01145 402918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01145 1429 SUPERFAMILY WRKY DNA-binding domain 198 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 1 35 - -
Cmo18g01145 1429 Gene3D WRKY domain 363 439 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 Gene3D WRKY domain 183 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 933 954 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 249 280 - -
Cmo18g01145 1429 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 302 358 - -
Cmo18g01145 1429 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 20 460 - -
Cmo18g01145 1429 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 460 IPR044810 GO:0003700
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 639 676 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 882 903 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 264 280 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 86 110 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 933 962 - -
Cmo18g01145 1429 ProSiteProfiles WRKY domain profile. 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 993 1012 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 332 358 - -
Cmo18g01145 1429 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01766 Cmo-Chr4:8911214 Cmo18g01145 Cmo-Chr18:11701929 0 dispersed
Cmo18g00660 Cmo-Chr18:8373183 Cmo18g01145 Cmo-Chr18:11701929 9.21E-23 dispersed
Cmo18g01145 Cmo-Chr18:11701929 Cmo16g01037 Cmo-Chr16:7226008 3.43E-73 dispersed
Cmo04g01765 Cmo-Chr4:8903567 Cmo18g01145 Cmo-Chr18:11701929 3.58E-124 transposed
Cmo12g00970 Cmo-Chr12:9059860 Cmo18g01145 Cmo-Chr18:11701929 2.70E-25 transposed
Cmo10g00226 Cmo-Chr10:983518 Cmo18g01145 Cmo-Chr18:11701929 4.58E-22 wgd
Cmo13g01143 Cmo-Chr13:9260063 Cmo18g01145 Cmo-Chr18:11701929 4.93E-21 wgd
Cmo15g00258 Cmo-Chr15:1248796 Cmo18g01145 Cmo-Chr18:11701929 9.19E-131 wgd
Cmo18g01145 Cmo-Chr18:11701929 Cmo04g01764 Cmo-Chr4:8901963 0 wgd
Cmo18g01145 Cmo-Chr18:11701929 Cmo04g02919 Cmo-Chr4:20697081 2.72E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11550 PF03106 WRKY 3.00E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01145 - - cmo:103489160 683.715