Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01147 ATGAGCTTACCTTCCGGGAGTGCCGCCGGTTTGCCAACGCCGGGGAATTCAGGAGGTAAGGGAAACTCCTCGTCGTCGTCATTGGCATCGGGGACGAGCAAGGAGAAGCAGAAAGAGAAAGCGAGAGTTAGTAGAACGTCGATGATATTGTGGCACGCTCACCAAAATGATCCTGCTGCTGTTCGCAAGCTTCTGGAGGAGGATCAGTCCCTTGTCCATGCTAGAGATTACGACAACCGCACCCCTCTCCATGTTGCATCGCTTCATGGCTGGATCGACGTTGCCAAGTGTTTGATTGAACACGGCGCTGATGTTAATGCCCAAGATCGCTGGAAGAATACTCCGCTAGCTGATGCAGAAGGAGCTAAAAAGCATGGCATGATTGAGTTATTAAAATCATATGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCCTCTGAACTAGATTTTTCTAACTCAGCTATTATCGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTACTGGCGTGGAACCCCTGTAGCTGTCAAACGTATCCTTCCATCACTATCTGATGATAGACTTGTGATTCAGGATTTTCGACATGAGGTTAATCTCTTGGTGAAACTACGCCATCCGAACATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGTTAATCACTGAATACTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCGCTCAGTCCTTCAACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAACCAAATGTTATAATTCACCGTGACCTGAAACCGAGGAACGTTCTGTTGGTTAATTCCGGAGCCGACCATCTAAAAGTTGGTGATTTTGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACACGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGGTATATGGCACCTGAAGTATTTAAGCACAGAAAATACGATAAGAAGGTGGACGTGTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGATCCACCACTGGCAAATTACGAGCCTTATGAAGCTGCCAAATATGTGGCCGAAGGTCATCGACCGATGTTCCGTTCGAAAGGATACCTTCCCGTTCTAAGAGATTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCTTCTTTCTTGGAGATCCTCAAAAGACTTGAAAGGGTGAAGGAAAATCTTCCCACTGATCATTCCTGGAATTTGTTTAATGCATAA 1341 45.56 MSLPSGSAAGLPTPGNSGGKGNSSSSSLASGTSKEKQKEKARVSRTSMILWHAHQNDPAAVRKLLEEDQSLVHARDYDNRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPSTAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRSKGYLPVLRDLTEECWASDMNKRPSFLEILKRLERVKENLPTDHSWNLFNA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11734150 11740312 + CmoCh18G011470.1 Cmo18g01147 402920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01147 446 CDD STKc_MAP3K-like 176 428 - -
Cmo18g01147 446 Gene3D Transferase(Phosphotransferase) domain 1 250 442 - -
Cmo18g01147 446 SUPERFAMILY Protein kinase-like (PK-like) 168 440 IPR011009 -
Cmo18g01147 446 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 438 - -
Cmo18g01147 446 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Cmo18g01147 446 SMART serkin_6 170 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01147 446 MobiDBLite consensus disorder prediction 1 32 - -
Cmo18g01147 446 Gene3D - 19 144 IPR036770 -
Cmo18g01147 446 Pfam Ankyrin repeats (3 copies) 49 109 IPR002110 GO:0005515
Cmo18g01147 446 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672|GO:0006468
Cmo18g01147 446 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524
Cmo18g01147 446 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 28 438 - -
Cmo18g01147 446 ProSiteProfiles Protein kinase domain profile. 170 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01147 446 PIRSF ILK 6 446 - -
Cmo18g01147 446 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Cmo18g01147 446 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Cmo18g01147 446 SMART ANK_2a 78 107 IPR002110 GO:0005515
Cmo18g01147 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Cmo18g01147 446 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Cmo18g01147 446 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01147 Cmo-Chr18:11734150 Cmo20g00274 Cmo-Chr20:1334263 2.69E-106 dispersed
Cmo18g01147 Cmo-Chr18:11734150 Cmo04g01759 Cmo-Chr4:8876062 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75081 PF07714 PK_Tyr_Ser-Thr 6.00E-64 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01147 - - csv:101215575 841.647