Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01159 ATGGGTTCTGTTCTTTTGTTTTTGGCAGGCTTCTATGCCATAGTTTCATCTGCTGATGCCTATGCAGGTGGAGGGTGGAGGGGCGCTCAAGCTACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTGTACAGTCAAGGCTATGGAACAAACACGGCTGCTTTGAGTACGGCTCTGTTTAACAATGGGTTGAGCTGTGGTTCTTGCTATGAGATTAGGTGCACCAGTGGCCGTAAATGGTGCCTACCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAATAGTGCCCTCCCCAACAACGCTGGAGGGTGGTGCAATCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTACCAACACATTGCTCAGGTACCCTGCAGGAGAAGGGGAGGGATAAGGTTCACCATCAATGGCCACTCCTACTTCAACTTAGTGCTCATCACAAACGTGGGTGGTGCTGGTGATGTTCATGCAGTTTCCATCAAAGGTTCAAGAACTGGTTGGCAAGCAATGTCAAGGAATTGGGGACAGAACTGGCAGAGCAACAGCTACCTGAATGGCCAAAGCCTGTCCTTCAAGGTCACCACCAGCGACGGCCGGACAGTCATTTCCAACAACGTTGTCCCAGCTCGCTGGTCCTTTGGACAGACTTACCGTGGTGCTCAATTCTAA 711 51.48 MGSVLLFLAGFYAIVSSADAYAGGGWRGAQATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCTSGRKWCLPGSIVVTATNFCPPNSALPNNAGGWCNPPLQHFDLSQPVYQHIAQVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNVVPARWSFGQTYRGAQF 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11792230 11794454 + CmoCh18G011590.1 Cmo18g01159 402932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01159 236 PANTHER EXPANSIN 6 236 - -
Cmo18g01159 236 Gene3D - 146 236 IPR036749 -
Cmo18g01159 236 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cmo18g01159 236 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cmo18g01159 236 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cmo18g01159 236 PRINTS Expansin signature 219 235 IPR002963 GO:0009664
Cmo18g01159 236 PRINTS Expansin signature 143 155 IPR002963 GO:0009664
Cmo18g01159 236 PRINTS Expansin signature 155 176 IPR002963 GO:0009664
Cmo18g01159 236 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Cmo18g01159 236 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 154 233 IPR007117 -
Cmo18g01159 236 SUPERFAMILY PHL pollen allergen 141 233 IPR036749 -
Cmo18g01159 236 SUPERFAMILY Barwin-like endoglucanases 25 162 IPR036908 -
Cmo18g01159 236 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cmo18g01159 236 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cmo18g01159 236 PRINTS Expansin/Lol pI family signature 181 195 IPR007118 GO:0005576
Cmo18g01159 236 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cmo18g01159 236 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Cmo18g01159 236 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cmo18g01159 236 SMART dpbb_1 61 141 IPR007112 -
Cmo18g01159 236 Gene3D - 12 145 IPR036908 -
Cmo18g01159 236 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 144 IPR007112 -
Cmo18g01159 236 PANTHER EXPANSIN-A15 6 236 IPR002963 GO:0009664
Cmo18g01159 236 Pfam Lytic transglycolase 61 145 IPR009009 -
Cmo18g01159 236 Pfam Expansin C-terminal domain 145 222 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01748 Cmo18g01159 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00178 Cmo-Chr15:811890 Cmo18g01159 Cmo-Chr18:11792230 2.94E-125 dispersed
Cmo18g01159 Cmo-Chr18:11792230 Cmo02g00797 Cmo-Chr2:4921039 2.96E-110 dispersed
Cmo01g00515 Cmo-Chr1:2473671 Cmo18g01159 Cmo-Chr18:11792230 2.33E-130 wgd
Cmo10g00214 Cmo-Chr10:951009 Cmo18g01159 Cmo-Chr18:11792230 4.18E-127 wgd
Cmo11g00173 Cmo-Chr11:837883 Cmo18g01159 Cmo-Chr18:11792230 3.19E-129 wgd
Cmo15g00274 Cmo-Chr15:1315251 Cmo18g01159 Cmo-Chr18:11792230 4.51E-117 wgd
Cmo18g01159 Cmo-Chr18:11792230 Cmo04g01748 Cmo-Chr4:8826880 1.68E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01159 - - cpep:111802732 490.73