Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01160 ATGGGAAGAGTAAAGCTCAAGATCAAGAGGCTGGACAATACAAATGGCCGCCAAGCAACTTTCGCCAAAAGAAAGCACGGTATCATCAAGAAAGCTAATGAGTTATCCATCTTATGCGATATTGATATTATTCTTCTCATGTTTTCGCCGACTGGAAAACCTTCTCTCTGCTCTGGAAAACGCAGCATTGAAGAAGTGATCGCTAAGTTTGCTCAACAAACTCCCCAGGAAAGAGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTGCGGAAGACTTTTAAGAAATTGGACCACGATGTCAACATCCAAGATTTCCTTGGGACAAGTAGCCAAACGATTGAGGATTTGGCTGGCCAAGCAAAGTTCTTACGGACTCAACTTTCTGAAGTACATCAGAGATTAAGCTTTTGGGGTAATCCTGAAAAGATCAACAACGTCGATCATTTGGCCCAAATGGAGGATTCGTTGAGAGAATCGCTTAATCAAGTTCGAGCGCACAAGGAAAATCTACAGAAGCATCCTCCAGTGCCACTAGAGTTCGCTAATCAGATGCAGGATGGAATGCATCTTCCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACACTACTCTTGGATTCCCAGTGATGCTCAAAATATAGTGTTACATGATGATCCCAACTTCGCTCCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCTTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTAGAAGTCCCGAGATTTCGAACTCTGGACACGAGAATGGCGTCCTCCCTGAACTAATCAGAACAGAACCTCTAAGGCCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCGAGATTTCAACCAGCAGCAGAGATGAAACTACCAGTAAATCCTGTAGATTATCGTGTTAATGGGAACTACGACACCGCCCAACTCAATTGGGCTTCTTCTTCTGGCCCTTGTGCTGTTTCATTGCTAGACGATCACTTATTTCCATAA 1026 43.96 MGRVKLKIKRLDNTNGRQATFAKRKHGIIKKANELSILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQQTPQERAKRKLESLEALRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKFLRTQLSEVHQRLSFWGNPEKINNVDHLAQMEDSLRESLNQVRAHKENLQKHPPVPLEFANQMQDGMHLPFDMSVEQQLQQLQHYSWIPSDAQNIVLHDDPNFAPHRDVECSASSSFASYPGYFGTGRSPEISNSGHENGVLPELIRTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMKLPVNPVDYRVNGNYDTAQLNWASSSGPCAVSLLDDHLFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11794852 11799469 - CmoCh18G011600.1 Cmo18g01160 402933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01160 341 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 340 - -
Cmo18g01160 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 340 - -
Cmo18g01160 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Cmo18g01160 341 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cmo18g01160 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 Coils Coil 76 96 - -
Cmo18g01160 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 Coils Coil 149 169 - -
Cmo18g01160 341 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Cmo18g01160 341 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01160 - - - csv:101203859 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01160 Cmo-Chr18:11794852 Cmo03g00892 Cmo-Chr3:6914599 3.24E-17 dispersed
Cmo10g01262 Cmo-Chr10:12962769 Cmo18g01160 Cmo-Chr18:11794852 6.01E-12 transposed
Cmo13g00420 Cmo-Chr13:5216891 Cmo18g01160 Cmo-Chr18:11794852 7.22E-11 transposed
Cmo16g00738 Cmo-Chr16:3684983 Cmo18g01160 Cmo-Chr18:11794852 8.78E-30 transposed
Cmo01g00833 Cmo-Chr1:4449565 Cmo18g01160 Cmo-Chr18:11794852 9.34E-102 wgd
Cmo13g01195 Cmo-Chr13:9434322 Cmo18g01160 Cmo-Chr18:11794852 4.31E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11551 PF00319 SRF-TF 6.40E-18 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01160 Cmo_Chr18 FPKM 9.79833 11.084283 18.818562 20.834404 10.896677 10.688174 9.750051 0.666609 0.621878 0.95137