Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01160 ATGGGAAGAGTAAAGCTCAAGATCAAGAGGCTGGACAATACAAATGGCCGCCAAGCAACTTTCGCCAAAAGAAAGCACGGTATCATCAAGAAAGCTAATGAGTTATCCATCTTATGCGATATTGATATTATTCTTCTCATGTTTTCGCCGACTGGAAAACCTTCTCTCTGCTCTGGAAAACGCAGCATTGAAGAAGTGATCGCTAAGTTTGCTCAACAAACTCCCCAGGAAAGAGCCAAAAGGAAATTGGAAAGCCTTGAAGCACTGCGGAAGACTTTTAAGAAATTGGACCACGATGTCAACATCCAAGATTTCCTTGGGACAAGTAGCCAAACGATTGAGGATTTGGCTGGCCAAGCAAAGTTCTTACGGACTCAACTTTCTGAAGTACATCAGAGATTAAGCTTTTGGGGTAATCCTGAAAAGATCAACAACGTCGATCATTTGGCCCAAATGGAGGATTCGTTGAGAGAATCGCTTAATCAAGTTCGAGCGCACAAGGAAAATCTACAGAAGCATCCTCCAGTGCCACTAGAGTTCGCTAATCAGATGCAGGATGGAATGCATCTTCCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACACTACTCTTGGATTCCCAGTGATGCTCAAAATATAGTGTTACATGATGATCCCAACTTCGCTCCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCTTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTAGAAGTCCCGAGATTTCGAACTCTGGACACGAGAATGGCGTCCTCCCTGAACTAATCAGAACAGAACCTCTAAGGCCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCGAGATTTCAACCAGCAGCAGAGATGAAACTACCAGTAAATCCTGTAGATTATCGTGTTAATGGGAACTACGACACCGCCCAACTCAATTGGGCTTCTTCTTCTGGCCCTTGTGCTGTTTCATTGCTAGACGATCACTTATTTCCATAA 1026 43.96 MGRVKLKIKRLDNTNGRQATFAKRKHGIIKKANELSILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQQTPQERAKRKLESLEALRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKFLRTQLSEVHQRLSFWGNPEKINNVDHLAQMEDSLRESLNQVRAHKENLQKHPPVPLEFANQMQDGMHLPFDMSVEQQLQQLQHYSWIPSDAQNIVLHDDPNFAPHRDVECSASSSFASYPGYFGTGRSPEISNSGHENGVLPELIRTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMKLPVNPVDYRVNGNYDTAQLNWASSSGPCAVSLLDDHLFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11794852 11799469 - CmoCh18G011600.1 Cmo18g01160 402933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01160 341 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 340 - -
Cmo18g01160 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 340 - -
Cmo18g01160 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Cmo18g01160 341 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cmo18g01160 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 Coils Coil 76 96 - -
Cmo18g01160 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo18g01160 341 Coils Coil 149 169 - -
Cmo18g01160 341 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Cmo18g01160 341 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01160 Cmo-Chr18:11794852 Cmo03g00892 Cmo-Chr3:6914599 3.24E-17 dispersed
Cmo10g01262 Cmo-Chr10:12962769 Cmo18g01160 Cmo-Chr18:11794852 6.01E-12 transposed
Cmo13g00420 Cmo-Chr13:5216891 Cmo18g01160 Cmo-Chr18:11794852 7.22E-11 transposed
Cmo16g00738 Cmo-Chr16:3684983 Cmo18g01160 Cmo-Chr18:11794852 8.78E-30 transposed
Cmo01g00833 Cmo-Chr1:4449565 Cmo18g01160 Cmo-Chr18:11794852 9.34E-102 wgd
Cmo13g01195 Cmo-Chr13:9434322 Cmo18g01160 Cmo-Chr18:11794852 4.31E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11551 PF00319 SRF-TF 6.40E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01160 - - csv:101203859 584.334