Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01164 ATGGCTGAAGTCGAAGTCAGAGACCCAACAATCAAGCTATTTGGGAAGACGATTTCTTTGCCATTCAACCATGTCGATCATGATTCTGAATCCAAATTTGCTTCTTCAGCAGCTACTGTTCTTAATGATTCCCAGAAGGAAACTTCATGTGAAGAACAGGGGAATGGCAGTGAAAAACAGAGCACAGAGCAAACGACATCGGTAATCAGTGAAAACCCATCAGTAGAAAGAGAAATTTCATCACCAAAAGCTGCAAAAAAGGAAGAAGAGAGCGATACAAGCATGTCCCCTGACAATAAAACCTTAAAAAAACCAGACAAAATCCTCCCTTGTCCTCGATGTAACAGCACGGACACCAAATTCTGTTACTACAACAACTACAATGTCAACCAACCTCGTCATTTTTGCAAGAATTGCCAAAGATACTGGACGGCCGGCGGGACAATGAGAAACGTTCCCGTCGGCGCCGGCCGACGGAAGAACAAAACCTCATCATCTTCACATTTCCATCAGTTATTAATTCCCGACGGCGGAAATGGATCCTTTCTCACTTTTGGCTCAGATTCTTCAAATGGGTTTGTCGTTGGTACAGAAAATGGAGATGACCAGTCAATTACAGCCTCCAATTCGTCGGAGAAAGGAAGTAAAATCACTTCACAGCAATCAGTAGTGAAAAAGATTGTCCCTTTTCCATGGCCTTATTATTCAATGTCTCCGCCGCCATTCACCCCGCCGGTGTATCCAGTGACGTATTACCCTGCACCACCGTACTGGGGGTACACAGCGCCGCCTTCTTGGACGGTAGTTAATCCCAACAGTGAAAGTTCGTTAACAAATTCCTCTGTTTTGGGGAAACGGTTAAGAGATGAGAGAAGTGTGAAACAGAGCAATTATGAACAACCCTGTTTCTTGATTCCAAAGACAATGAAACTGGATGATCCAAACGAAAAAGCTGCAGCAAGCTCCATCAATGGCGGACTTTTCAGCTCTTTCCAACAAAATTCAAAGGGAAAAGAAGAACATCACAATGAAAGTTACTCGCTTTTGCAGGCAAATCCAGCAGCTTTTTCTCGGGCTATGAAATTCCGAGAGATTGCTTAG 1101 43.78 MAEVEVRDPTIKLFGKTISLPFNHVDHDSESKFASSAATVLNDSQKETSCEEQGNGSEKQSTEQTTSVISENPSVEREISSPKAAKKEEESDTSMSPDNKTLKKPDKILPCPRCNSTDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTSSSSHFHQLLIPDGGNGSFLTFGSDSSNGFVVGTENGDDQSITASNSSEKGSKITSQQSVVKKIVPFPWPYYSMSPPPFTPPVYPVTYYPAPPYWGYTAPPSWTVVNPNSESSLTNSSVLGKRLRDERSVKQSNYEQPCFLIPKTMKLDDPNEKAAASSINGGLFSSFQQNSKGKEEHHNESYSLLQANPAAFSRAMKFREIA 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11816423 11818202 - CmoCh18G011640.1 Cmo18g01164 402937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01164 366 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
Cmo18g01164 366 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Cmo18g01164 366 MobiDBLite consensus disorder prediction 80 107 - -
Cmo18g01164 366 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Cmo18g01164 366 MobiDBLite consensus disorder prediction 29 109 - -
Cmo18g01164 366 MobiDBLite consensus disorder prediction 32 77 - -
Cmo18g01164 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 201 364 - -
Cmo18g01164 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 187 - -
Cmo18g01164 366 PANTHER CYCLIC DOF FACTOR 2 5 187 IPR045174 GO:0003700|GO:0006355
Cmo18g01164 366 PANTHER CYCLIC DOF FACTOR 2 201 364 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01164 - - - bhj:120080758 509.605
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01744 Cmo18g01164 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00585 Cmo-Chr14:2984812 Cmo18g01164 Cmo-Chr18:11816423 2.44E-67 dispersed
Cmo01g00829 Cmo-Chr1:4438108 Cmo18g01164 Cmo-Chr18:11816423 4.25E-62 wgd
Cmo10g00211 Cmo-Chr10:943198 Cmo18g01164 Cmo-Chr18:11816423 1.89E-66 wgd
Cmo11g00169 Cmo-Chr11:826368 Cmo18g01164 Cmo-Chr18:11816423 2.61E-64 wgd
Cmo13g01192 Cmo-Chr13:9426937 Cmo18g01164 Cmo-Chr18:11816423 1.67E-60 wgd
Cmo18g01164 Cmo-Chr18:11816423 Cmo04g01744 Cmo-Chr4:8813998 2.92E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g924 . . . . . Bpe10g00878 Bma14g01650 Bma15g00151 Cmo04g01744 Cmo18g01164 . Cma18g01146 . Car18g01055 Sed06g1520 Cpe09g00184 Cpe01g01472 Bhi07g01554 Tan04g1071 Cmetu10g1699 Lac13g0326 Hepe10g1750 . . Cla05g02435 Cam05g2620 Cec05g2653 Cco05g2691 Clacu05g2622 Cmu05g2476 Cre05g2589 . . . . Lsi04g00411 Csa05g02462 Chy10g01010 Cme10g00408 Blo06g00909 Blo11g00777 Bda07g01470 . . . . . . . . Cma04g01665 . Car04g01704 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007008 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11554 PF02701 zf-Dof 2.80E-32 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01164 Cmo_Chr18 FPKM 8.733856 9.005179 23.897476 23.375616 19.045889 19.53944 20.105986 6.249622 5.997039 6.282524