Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01170 ATGAGGTTTTCTCTATCCATTTCCGGAAAGTGGGCGCTTGCCGGCGTCACTTTCTTCTTGCAACAACAATCCTTTATGCATTTTCAAGTCCTGTTCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTAGGATTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACGGGTTATGCTCGAAGTAGTCAGCCGAATGAGGCTTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTTGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATTTGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTCGAAGAGATGAAGAAAGCAGGAGTTCGACCTGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGATGAAGGTACAGGTTATTTCTATAGCATGTATAAAAACCATGGAATAACTCCAGGGATCAAGCATTATGGATGTATGGTCGATTTGCTTGGTCGAACAGGTCGACTAGACGAGGCTTACAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAGGACGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACACGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTCGAGCTGCGACGAGCGCTCGACGAGTTAATCAAGGAAATAAAGTTAGCGGGATATGTACCGGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTTGTCCTGAGATATCACAGCGAAAAGCTAGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTAGTCAAGAACCTCCGTATTTGTGGAGACTGTCACAATGCTGCAAAGCTTATATCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGGTAA 1542 43.77 MRFSLSISGKWALAGVTFFLQQQSFMHFQVLFSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVDEGTGYFYSMYKNHGITPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIKEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDFW 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11830524 11832609 - CmoCh18G011700.1 Cmo18g01170 402943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01170 513 Pfam PPR repeat 179 204 IPR002885 -
Cmo18g01170 513 Pfam PPR repeat 280 303 IPR002885 -
Cmo18g01170 513 Pfam PPR repeat 79 102 IPR002885 -
Cmo18g01170 513 Gene3D Tetratricopeptide repeat domain 25 176 IPR011990 GO:0005515
Cmo18g01170 513 Gene3D Tetratricopeptide repeat domain 177 407 IPR011990 GO:0005515
Cmo18g01170 513 Pfam PPR repeat family 103 150 IPR002885 -
Cmo18g01170 513 Pfam PPR repeat family 205 251 IPR002885 -
Cmo18g01170 513 Pfam DYW family of nucleic acid deaminases 420 513 IPR032867 GO:0008270
Cmo18g01170 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Cmo18g01170 513 Pfam E motif 322 384 IPR046848 -
Cmo18g01170 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Cmo18g01170 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 499 - -
Cmo18g01170 513 TIGRFAM PPR: pentatricopeptide repeat domain 106 139 IPR002885 -
Cmo18g01170 513 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Cmo18g01170 513 TIGRFAM PPR: pentatricopeptide repeat domain 179 205 IPR002885 -
Cmo18g01170 513 PANTHER BNAA02G26650D PROTEIN 25 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01170 - - - csv:116404120 887.486
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01170 Cmo-Chr18:11830524 Cmo13g00347 Cmo-Chr13:4436517 2.09E-40 dispersed
Cmo18g01170 Cmo-Chr18:11830524 Cmo10g00608 Cmo-Chr10:2749382 5.43E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01170 Cmo_Chr18 FPKM 0.680548 0.684867 0.0 0.0 0.0 0.0 0.0 0.052576 0.0 0.0