Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01172 ATGGCGTGGACGATAGGAAGAACCCGGACCCGGCTACTTACGCGCCAATATTACAAGTCCCGTTATCGGATTGTATTTTTCGTTACATCTATATACCTTAGAAGATTTGTTGTTCTTGGCGACGAAGGTCAATTCCCGTTTTGGACGGAACGAAACCAGCCCGATTTCATTGCATTACCACATCTTTCTCATCATTTGCTCCGATTACTACTAGTGTTTGATTTCTGGTTGCGGAGAATGAGCGATCATCTCGCTTTGTATGTGGATCGATTAATTCGGCCGGCGCCCGTTGATTCGGAGCTCAGCCCGATTGAGGTTGTTCCTCTCTTGCCGGTCGCAGGGAACTTGGACGGCGATTCAGTGGGCTTGTCTAATTCGACGTCCAATTCCAATGCTGATGAGAGGGAAGAAAAGAATGAGGGTTTGGATGGAGAGGATGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGACGTGATTAAGAAGCTCGAAACGCCATGCGCCTGTAGTGGAAGTCTTAAGTATGCTCATCGGAAGTGTATACAGCATTGGTGCAATGAAAAAGGGGATATCATTTGTGAGATTTGTCATCAGCCTTACCAGCCTGATTATACAGCTCCACCACCTCCCCCTCGAGTTGAAGAAACGTCTATTGATATTGGGGGAGGGTGGACCATTACTGGCACACCTTTGAGTTTACACGATCCTCGCCTTTTGGCTTTTGCAGAGACTGAGCGTAATTTATTGGAAGTCGAGTATGATGAATATGCTGCTTCTGATGCCGGTGGAGCAGCATTTTGTCGAGCAGCTGCTCTTATTATACCCTGCAGTCTCAATAACTAG 855 46.9 MAWTIGRTRTRLLTRQYYKSRYRIVFFVTSIYLRRFVVLGDEGQFPFWTERNQPDFIALPHLSHHLLRLLLVFDFWLRRMSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKNEGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAASDAGGAAFCRAAALIIPCSLNN 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11837026 11839428 + CmoCh18G011720.1 Cmo18g01172 402945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01172 284 MobiDBLite consensus disorder prediction 131 145 - -
Cmo18g01172 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 211 IPR013083 -
Cmo18g01172 284 Pfam RING-variant domain 155 200 IPR011016 GO:0008270
Cmo18g01172 284 Pfam Protein of unknown function (DUF3675) 206 278 IPR022143 -
Cmo18g01172 284 SUPERFAMILY RING/U-box 152 205 - -
Cmo18g01172 284 SMART ringv_2 154 201 IPR011016 GO:0008270
Cmo18g01172 284 MobiDBLite consensus disorder prediction 121 145 - -
Cmo18g01172 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 80 278 - -
Cmo18g01172 284 ProSiteProfiles Zinc finger RING-CH-type profile. 147 207 IPR011016 GO:0008270
Cmo18g01172 284 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 80 278 IPR033275 -
Cmo18g01172 284 CDD RING_CH-C4HC3_MARCH 155 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01172 - - - cmax:111467420 360.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01735 Cmo18g01172 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01172 Cmo-Chr18:11837026 Cmo01g00361 Cmo-Chr1:1755598 4.95E-28 dispersed
Cmo01g00827 Cmo-Chr1:4424101 Cmo18g01172 Cmo-Chr18:11837026 7.49E-68 wgd
Cmo01g00510 Cmo-Chr1:2458651 Cmo18g01172 Cmo-Chr18:11837026 1.17E-71 wgd
Cmo13g01189 Cmo-Chr13:9418504 Cmo18g01172 Cmo-Chr18:11837026 3.96E-66 wgd
Cmo18g01172 Cmo-Chr18:11837026 Cmo04g01735 Cmo-Chr4:8785286 1.71E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g916 Blo01g00426 . Bda01g02156 . . Bpe10g00871 Bma14g01644 Bma15g00158 Cmo04g01735 Cmo18g01172 . Cma18g01151 . Car18g01060 Sed08g1983 Cpe09g00179 Cpe01g01464 Bhi07g01568 Tan04g1080 Cmetu10g1577 Lac13g0318 Hepe10g1741 . . Cla05g02442 Cam05g2627 Cec05g2661 Cco05g2699 Clacu05g2631 Cmu05g2485 Cre05g2598 Cone13ag0955 Cone19ag0947 Cone6ag0584 Cone9ag0587 Lsi04g00426 Csa05g02449 Chy10g01000 Cme10g00416 Blo06g00906 Blo11g00773 Bda07g01520 . Bpe11g01642 Bpe02g02343 Bma01g00099 . . . . Cma04g01657 . Car04g01697 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01172 Cmo_Chr18 FPKM 9.792034 9.511337 28.168606 31.255899 28.999838 25.613581 30.514484 36.28241 33.310139 36.659603