Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01173 | ATGCAATGGAAGTCTCAGATTCTGAAGACGATGATTACGTGTCTGCATTCTTCTCTATTTTCTTGCTTCGAGCAGCTGGTTTTCTCTTGCCCTGCTACATTATGGCTTGTGCAATCAGCATCTTGCAACGTCGACAACGAAGACTGTGCGTTGAATATCAAGCTAGACGCCTCTGACTTCCCAGATCCCCTTGTTGAAAGAACAAAGGACAGCATAAAGAAGAGCAGTTGGAGTCGGAACAAGAACCAAAGCAGGTGCACAAAAGAAGGGCCACAAACCATCAGACAGATCCAAGAAGTCCAATTGATGCAACAAAAGCAGCATAAGCTCATTCTTAAGGGTGTTTCCAGGGAGGATATGCACAAAAAAAAGGGGAAATCCATGGCGCTGATCCACATCAAGTCATCAATCAACCAAAAGAAGAGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTTACTTACTGCCACACCCTCCGATCCCACTTCTCTAAATTGCGCAGCCTGTGGTTGCCACCGCAACTTCCACCGCCGTGAACCGGATGATAATCTCCCCACCCACCGACGTTTCCAATCATATCGCCTCTGCACACCGCCGTCGCCGAAGCCTCAAAGCCCATCCTCGCCGATCCCTTTACAAATTTCGCACATCCCACCGCCAGTTCACTTCTCCGCCCCTCATATGTTGCTGGCATTGAGCACCGACGCGGCGGCGCAAGAGCAGCGTGGCGGTCGATTCAACCCAAAACAGAGGAAGAGAAACAGGACCAAATTCAGCAGGGATCAAAAGCAAAAGATGCGATCTTTCTCCGAGAAAATGGGATGGAAAATTGGGAAATGTGATGAAAGGTTAGTGGAGGAATTCTGTAATGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGATTCTCAGAGTAGCGAAAATGGAAAGGATGACTCAAAACAGAGCTCATAA | 1041 | 48.51 | MQWKSQILKTMITCLHSSLFSCFEQLVFSCPATLWLVQSASCNVDNEDCALNIKLDASDFPDPLVERTKDSIKKSSWSRNKNQSRCTKEGPQTIRQIQEVQLMQQKQHKLILKGVSREDMHKKKGKSMALIHIKSSINQKKRECLKNHAATVGGHALDGCGEFMPLLTATPSDPTSLNCAACGCHRNFHRREPDDNLPTHRRFQSYRLCTPPSPKPQSPSSPIPLQISHIPPPVHFSAPHMLLALSTDAAAQEQRGGRFNPKQRKRNRTKFSRDQKQKMRSFSEKMGWKIGKCDERLVEEFCNEIGIGKRVLRVWMHNNKYMGGRTEKNRDSQSSENGKDDSKQSS | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 11839574 | 11844082 | + | CmoCh18G011730.1 | Cmo18g01173 | 402946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01173 | 346 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 141 | 192 | IPR006456 | - | |
Cmo18g01173 | 346 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | - | - | |
Cmo18g01173 | 346 | Pfam | ZF-HD protein dimerisation region | 141 | 193 | IPR006456 | - | |
Cmo18g01173 | 346 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 125 | 329 | - | - | |
Cmo18g01173 | 346 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 125 | 329 | - | - | |
Cmo18g01173 | 346 | MobiDBLite | consensus disorder prediction | 322 | 346 | - | - | |
Cmo18g01173 | 346 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 264 | 321 | IPR006455 | - | |
Cmo18g01173 | 346 | Gene3D | - | 248 | 324 | - | - | |
Cmo18g01173 | 346 | SUPERFAMILY | Homeodomain-like | 255 | 321 | IPR009057 | - | |
Cmo18g01173 | 346 | MobiDBLite | consensus disorder prediction | 250 | 282 | - | - | |
Cmo18g01173 | 346 | MobiDBLite | consensus disorder prediction | 323 | 346 | - | - | |
Cmo18g01173 | 346 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 142 | 192 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g01173 | Cmo-Chr18:11839574 | Cmo07g00483 | Cmo-Chr7:2202787 | 6.79E-43 | dispersed | |
Cmo15g00285 | Cmo-Chr15:1345770 | Cmo18g01173 | Cmo-Chr18:11839574 | 6.94E-51 | wgd | |
Cmo18g01173 | Cmo-Chr18:11839574 | Cmo04g01734 | Cmo-Chr4:8784011 | 2.42E-12 | wgd | |
Cmo18g01173 | Cmo-Chr18:11839574 | Cmo04g02895 | Cmo-Chr4:20605577 | 7.13E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11555 | PF04770 | ZF-HD_dimer | 5.40E-26 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01173 | - | - | cmo:103489117 | 299.671 |