Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01173 ATGCAATGGAAGTCTCAGATTCTGAAGACGATGATTACGTGTCTGCATTCTTCTCTATTTTCTTGCTTCGAGCAGCTGGTTTTCTCTTGCCCTGCTACATTATGGCTTGTGCAATCAGCATCTTGCAACGTCGACAACGAAGACTGTGCGTTGAATATCAAGCTAGACGCCTCTGACTTCCCAGATCCCCTTGTTGAAAGAACAAAGGACAGCATAAAGAAGAGCAGTTGGAGTCGGAACAAGAACCAAAGCAGGTGCACAAAAGAAGGGCCACAAACCATCAGACAGATCCAAGAAGTCCAATTGATGCAACAAAAGCAGCATAAGCTCATTCTTAAGGGTGTTTCCAGGGAGGATATGCACAAAAAAAAGGGGAAATCCATGGCGCTGATCCACATCAAGTCATCAATCAACCAAAAGAAGAGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTTACTTACTGCCACACCCTCCGATCCCACTTCTCTAAATTGCGCAGCCTGTGGTTGCCACCGCAACTTCCACCGCCGTGAACCGGATGATAATCTCCCCACCCACCGACGTTTCCAATCATATCGCCTCTGCACACCGCCGTCGCCGAAGCCTCAAAGCCCATCCTCGCCGATCCCTTTACAAATTTCGCACATCCCACCGCCAGTTCACTTCTCCGCCCCTCATATGTTGCTGGCATTGAGCACCGACGCGGCGGCGCAAGAGCAGCGTGGCGGTCGATTCAACCCAAAACAGAGGAAGAGAAACAGGACCAAATTCAGCAGGGATCAAAAGCAAAAGATGCGATCTTTCTCCGAGAAAATGGGATGGAAAATTGGGAAATGTGATGAAAGGTTAGTGGAGGAATTCTGTAATGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGATTCTCAGAGTAGCGAAAATGGAAAGGATGACTCAAAACAGAGCTCATAA 1041 48.51 MQWKSQILKTMITCLHSSLFSCFEQLVFSCPATLWLVQSASCNVDNEDCALNIKLDASDFPDPLVERTKDSIKKSSWSRNKNQSRCTKEGPQTIRQIQEVQLMQQKQHKLILKGVSREDMHKKKGKSMALIHIKSSINQKKRECLKNHAATVGGHALDGCGEFMPLLTATPSDPTSLNCAACGCHRNFHRREPDDNLPTHRRFQSYRLCTPPSPKPQSPSSPIPLQISHIPPPVHFSAPHMLLALSTDAAAQEQRGGRFNPKQRKRNRTKFSRDQKQKMRSFSEKMGWKIGKCDERLVEEFCNEIGIGKRVLRVWMHNNKYMGGRTEKNRDSQSSENGKDDSKQSS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11839574 11844082 + CmoCh18G011730.1 Cmo18g01173 402946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01173 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 141 192 IPR006456 -
Cmo18g01173 346 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Cmo18g01173 346 Pfam ZF-HD protein dimerisation region 141 193 IPR006456 -
Cmo18g01173 346 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 125 329 - -
Cmo18g01173 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 125 329 - -
Cmo18g01173 346 MobiDBLite consensus disorder prediction 322 346 - -
Cmo18g01173 346 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 264 321 IPR006455 -
Cmo18g01173 346 Gene3D - 248 324 - -
Cmo18g01173 346 SUPERFAMILY Homeodomain-like 255 321 IPR009057 -
Cmo18g01173 346 MobiDBLite consensus disorder prediction 250 282 - -
Cmo18g01173 346 MobiDBLite consensus disorder prediction 323 346 - -
Cmo18g01173 346 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 142 192 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01173 Cmo-Chr18:11839574 Cmo07g00483 Cmo-Chr7:2202787 6.79E-43 dispersed
Cmo15g00285 Cmo-Chr15:1345770 Cmo18g01173 Cmo-Chr18:11839574 6.94E-51 wgd
Cmo18g01173 Cmo-Chr18:11839574 Cmo04g01734 Cmo-Chr4:8784011 2.42E-12 wgd
Cmo18g01173 Cmo-Chr18:11839574 Cmo04g02895 Cmo-Chr4:20605577 7.13E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11555 PF04770 ZF-HD_dimer 5.40E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01173 - - cmo:103489117 299.671