Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01181 ATGGGAAGGGTGAGCTTGCCGCCACCTGTTTGTGATACAAATCTCTCGCAGAGAGTGTCTTTTGAGAGCAATAACCTCCGTGAAGCCTCTTTTTCTTCTTACTTGAACCATGCAGAGCAAGAATTTGTGCGTAAACTTGCTGAATCAACTCGCAATCGGTCTAATAATTCCACCATTACCACAACAGCTCAAGAACAAGATGAAGATCATATAGAAGTTTTTGGAGCAGAGAAGTATTTCAATGGCGGAATTAACAGCCCAGAGCTCATCAAATTCTGCTCTGAAAATAAAAAACAGAGCAAGAAGCCTAAAAGTTGCAGCTCAACTCGTTCTGAAGGGAGTTGGAATAGCCAAAATGGTTTGTTACAGAAAGTAAATAGAAAATCTTCGAAGGAAATTAAGAAGAAATCGTCACAATTGGCTAAGATTTTGCTGTATAAATGCTATTGCTGCAACAACAAGTCTGTGGAAGTAAAGAACAATGACAAATCGCCGCCGACCAAATCAGGGATAAATTTCACGTTTCAGAGCTCAATACCGGAGGCCACGAAGAACACGGCGCTGAAAATACAAATTCAAGGCCGGAAATCGATTGAGGTCTTTGGATCCCCAAATGTCGATGCTTTGAACATGAATCATTTGGAGAAGAGGCTGTCGGTAATGGCGTGGAACGACGTCGTTCCGAGAGTGAAAGCTTCTGATTCCGATCAAATCTACGACGAGGACACCGGAAGTGATGCAAGTTCGGATCTTTTTGAGATTGAGAGCTTAACGGGGAACCCCAATTCGATTCTCACAAGACAGGGCTCTAATTGCTCTGATTGTATAACACCCACCGCGCCAAGCGAGGCGAGCATTGATTGGAGTGTAACCACGGCCAGCGCCGCTGATTTCTCCGTCGTGTCGGACTACGATGAACGGCGGCTCTCCACCACCGCTGCAGCCTACATGACTAAATCCAGCTACGAGAGCGACGTGGAGAATATTCATTGGCGGCGTTCGAATCTTCTGATGGGTTGTAAGAATCAGAAAGCGGTGAGAGTGGCCGGAGATAAGTACGATTCTCCGGCGGAAGTTCGCCGGAGAACGGCGTCGTTTGGAAGGCTGATGAGGTTCGAAGCTGATACCAAAATTATGGGGTTTAGCTCGAATCAGAGATTTGCTTGTACGCTTCGCTCATGA 1182 45.94 MGRVSLPPPVCDTNLSQRVSFESNNLREASFSSYLNHAEQEFVRKLAESTRNRSNNSTITTTAQEQDEDHIEVFGAEKYFNGGINSPELIKFCSENKKQSKKPKSCSSTRSEGSWNSQNGLLQKVNRKSSKEIKKKSSQLAKILLYKCYCCNNKSVEVKNNDKSPPTKSGINFTFQSSIPEATKNTALKIQIQGRKSIEVFGSPNVDALNMNHLEKRLSVMAWNDVVPRVKASDSDQIYDEDTGSDASSDLFEIESLTGNPNSILTRQGSNCSDCITPTAPSEASIDWSVTTASAADFSVVSDYDERRLSTTAAAYMTKSSYESDVENIHWRRSNLLMGCKNQKAVRVAGDKYDSPAEVRRRTASFGRLMRFEADTKIMGFSSNQRFACTLRS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11863691 11864872 + CmoCh18G011810.1 Cmo18g01181 402954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01181 393 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 11 382 IPR039615 GO:0009638
Cmo18g01181 393 MobiDBLite consensus disorder prediction 49 64 - -
Cmo18g01181 393 MobiDBLite consensus disorder prediction 106 126 - -
Cmo18g01181 393 MobiDBLite consensus disorder prediction 99 130 - -
Cmo18g01181 393 MobiDBLite consensus disorder prediction 47 66 - -
Cmo18g01181 393 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1 11 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01181 - - - cmos:111449333 756.133
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00055 Cmo-Chr6:344323 Cmo18g01181 Cmo-Chr18:11863691 3.49E-08 dispersed
Cmo14g00471 Cmo-Chr14:2329405 Cmo18g01181 Cmo-Chr18:11863691 1.59E-06 dispersed
Cmo01g00505 Cmo-Chr1:2436204 Cmo18g01181 Cmo-Chr18:11863691 9.59E-24 transposed
Cmo01g00821 Cmo-Chr1:4392754 Cmo18g01181 Cmo-Chr18:11863691 3.33E-32 wgd
Cmo13g01179 Cmo-Chr13:9388562 Cmo18g01181 Cmo-Chr18:11863691 2.11E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g904 . Blo16g01118 Bda01g02160 Bda11g01219 . Bpe10g00867 Bma14g01640 Bma15g00161 . Cmo18g01181 . Cma18g01157 . Car18g01066 Sed08g1988 Cpe09g00173 Cpe01g01461 Bhi07g01573 Tan04g1087 Cmetu10g1435 Lac13g0312 Hepe10g1735 . . Cla05g02448 Cam05g2634 Cec05g2667 Cco05g2705 Clacu05g2637 Cmu05g2491 Cre05g2604 . . Cone6ag0592 Cone9ag0595 Lsi04g00431 Csa05g02443 Chy10g00995 Cme10g00422 Blo06g00904 Blo11g00769 . Bda11g01219 Bpe11g01639 Bpe02g02346 Bma01g00095 Bma06g00683 . . . Cma04g01652 . Car04g01693 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004283 3 1 3 5 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01181 Cmo_Chr18 FPKM 0.0 0.0 0.404627 0.0 0.887708 2.168402 2.197286 1.142947 2.074318 2.538851