Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01183 ATGGACGCTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAACACCACCCTTGTTCCACCTCCGCCAACAACGGAACATCAACCACTACTCCAATTCTTCAATCCTCTTCTTCTTCTTCACCCAACAAGCCCCCTCCCAAAAGGGCCACCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGCCGTATTCGTATGCCTGCTCTTTGCGCTGCTAGGGTTTTTCAGCTCACTAGAGAACTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAGCAAGCTGAGCCCGCCGTAATTGCCGCTACCGGAACCGGTACAATTCCGGCGAATTTCACTTCACTTAATATTTCCCTTCGTAGCTCCGGCTCCACCATCTCCGCCCCTTCCCACTTCCGAACGAGCTATTTCAACCCGACCCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGATCGGAGTAACGCTCTCGTGGATGATTCTTCTACATTCTTGAATTTCAACTCTTCGAACTATGTCAAGCACGATCAGGGTGGAATTGATTTGACTGAGGCGGGAAAAAAACGGCGGCCGGAGCAGTCGGAATCTTCATCGGAAAATCCAATCGGGAATTATTTAGTTCAATCGAATTCCGGGTCGATTCCAGCGAGTCACGGCACGGCGGTACCGACGACATTTTGGATGATGACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTCCCGTCGATGAGTAGCAGCAGTATGTTCAGAGGAGCAGCTGCAGCTGGTGGCAGTGGCGGGTTTCATTTCATGAATCTTCCACCGCCAATGGCTCTTTTGCCAACTGCCCAACCGTTGGGCTCCGGGATCGGTGGCAGTGGCGGCGGTCCAGCCACCGACACCCACTTGGGGATGTTAGCAGCGCTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTGTCAGAGTCTCCGACAAGAGGAGTGGCGGCTGTTCATCAAAGTGGGAATGAAGCTCATGATTCCACTTCAAATCGTGATCAATCTTAG 1068 51.69 MDAENGIRRPNFPLQLLEKKEEHHPCSTSANNGTSTTTPILQSSSSSSPNKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHFRTSYFNPTQFAVRTRSDLWDRSNALVDDSSTFLNFNSSNYVKHDQGGIDLTEAGKKRRPEQSESSSENPIGNYLVQSNSGSIPASHGTAVPTTFWMMTNPSNPASDPMWTFPSMSSSSMFRGAAAAGGSGGFHFMNLPPPMALLPTAQPLGSGIGGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQSGNEAHDSTSNRDQS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11881839 11882906 + CmoCh18G011830.1 Cmo18g01183 402956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01183 355 MobiDBLite consensus disorder prediction 191 206 - -
Cmo18g01183 355 ProSiteProfiles TCP domain profile. 59 113 IPR017887 -
Cmo18g01183 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 335 IPR005333 GO:0003700
Cmo18g01183 355 MobiDBLite consensus disorder prediction 55 71 - -
Cmo18g01183 355 MobiDBLite consensus disorder prediction 187 216 - -
Cmo18g01183 355 MobiDBLite consensus disorder prediction 325 355 - -
Cmo18g01183 355 Pfam TCP family transcription factor 58 181 IPR017887 -
Cmo18g01183 355 MobiDBLite consensus disorder prediction 325 349 - -
Cmo18g01183 355 MobiDBLite consensus disorder prediction 1 71 - -
Cmo18g01183 355 MobiDBLite consensus disorder prediction 27 54 - -
Cmo18g01183 355 PANTHER TRANSCRIPTION FACTOR TCP23 9 335 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01729 Cmo18g01183 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01953 Cmo-Chr4:9996727 Cmo18g01183 Cmo-Chr18:11881839 2.75E-47 dispersed
Cmo18g00812 Cmo-Chr18:9545980 Cmo18g01183 Cmo-Chr18:11881839 1.56E-40 dispersed
Cmo10g00203 Cmo-Chr10:910288 Cmo18g01183 Cmo-Chr18:11881839 1.05E-92 wgd
Cmo11g00159 Cmo-Chr11:799344 Cmo18g01183 Cmo-Chr18:11881839 3.83E-81 wgd
Cmo13g01176 Cmo-Chr13:9377630 Cmo18g01183 Cmo-Chr18:11881839 2.62E-53 wgd
Cmo18g01183 Cmo-Chr18:11881839 Cmo04g01729 Cmo-Chr4:8756861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11557 PF03634 TCP 7.40E-38 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01183 - - cmax:111485089 582.408