Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01187 ATGTCGTCCAGAAGCTCGCGTTCTAGGCGCTCATCTGTGCCTTCTAGCAACATTTCTGATGAACAAATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGCGCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTTCAAGAGACCTGCAACTACATAAGAAGCTTACAAAGGGAGGTGGGCGACTTAAGCGACCGATTATCAGAGCTGTTGCTATCAACTGACCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTCATCGAAAACATGAATCCTGGTGGGTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACGGAGAAGGATATCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTGAGGTCTGGTGAAGATGCCTGCACTGCATATGTGTCATTCAAAGATGCTTACTCTCAAGAGACTGCTTGCCTGCTGAGTGGTGCAACAATTGTAGATCAACGAGTGTGCATAACACGGTGGGGACATTTTGATGAAGAATTTGATTTCTGGAGCAGGCCTTCCGGTTACCATGAAGAAGATGGTACTCCTCCTTCGGCTCAAAGAAGTCAGTTTGTTTCCACCGCTGGAACCGCAGTGTCCATGGCCCAGGACGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGCAAAGATACATTTACGAAAGCCAAAGCATTTGATGAATCTCATCAGGTCTCAGCAACCGCAGCAGCTAAGGTAGCTGATTTGAGTAACAGAATTGGCCTTACTGACATGATTGGTGCAGGGTATGAAGCGGCTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACCAAATCAGCTATATCAGCCACTGGAAGAACAGCTGCTGCTGCTGCTGATACGGTGGTCAGGAGTAGCTACTTCTCCAGGGGAGCTCTTTTCATGTCCGATGCCCTGAATCGAGCTGCCAAAGCTGCAGCTGACTTGGGTAGTCGTGGTCTCGAACATTAA 1026 48.15 MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLIENMNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETACLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMAQDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAKTMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGLEH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11918942 11923306 + CmoCh18G011870.1 Cmo18g01187 402960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01187 341 Coils Coil 59 79 - -
Cmo18g01187 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 166 IPR000504 GO:0003723
Cmo18g01187 341 Pfam Helix-loop-helix DNA-binding domain 22 63 IPR011598 GO:0046983
Cmo18g01187 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 62 IPR011598 GO:0046983
Cmo18g01187 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 169 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01187 - - - csv:101221355 416.772
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02886 Cmo18g01187 CCT
Cmo04g02886 Cmo18g01187 ECH
Cmo04g01723 Cmo18g01187 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01187 Cmo-Chr18:11918942 Cmo20g00931 Cmo-Chr20:4822403 3.59E-42 dispersed
Cmo01g00816 Cmo-Chr1:4370015 Cmo18g01187 Cmo-Chr18:11918942 4.58E-08 wgd
Cmo13g01171 Cmo-Chr13:9370016 Cmo18g01187 Cmo-Chr18:11918942 4.57E-09 wgd
Cmo15g00294 Cmo-Chr15:1385105 Cmo18g01187 Cmo-Chr18:11918942 5.22E-23 wgd
Cmo18g01187 Cmo-Chr18:11918942 Cmo04g01723 Cmo-Chr4:8731610 5.05E-157 wgd
Cmo18g01187 Cmo-Chr18:11918942 Cmo04g02886 Cmo-Chr4:20540974 2.83E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11558 PF00076 RRM_1 1.60E-05 CL0221 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01187 Cmo_Chr18 FPKM 5.317379 4.824546 9.463759 8.348778 9.786456 10.35104 9.438294 9.662204 10.182825 11.284431