Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01188 ATGACGAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGCTCCAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGAATTTCATGGTGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGAGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTCTCTGATGATGGATCACAGGCAGGTGAGAAGAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAACTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTACAGCCCAGACAGATAGCTATCTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACAAAGCAGCTAGAGAAAGACTACGATGTTCTTAAAAGACAATTTGAAGCTATGAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAATCTGAACAAAGAAACAGAAGGGTCTTGCAGTAACAGAAGTGAGAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCACCACCCAACAAACAGGCCTCTTTTCCCCACCTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCCACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAAGCAGCAGTTTGTCCAACATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 894 43.4 MTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQEFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTNRPLFPTSLRPPALAQLFQTSSRSSDPPKPLDNNNHPQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11928384 11930570 + CmoCh18G011880.1 Cmo18g01188 402961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01188 297 Coils Coil 131 179 - -
Cmo18g01188 297 CDD homeodomain 84 140 IPR001356 GO:0003677
Cmo18g01188 297 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Cmo18g01188 297 MobiDBLite consensus disorder prediction 187 209 - -
Cmo18g01188 297 Gene3D - 76 146 - -
Cmo18g01188 297 MobiDBLite consensus disorder prediction 62 84 - -
Cmo18g01188 297 MobiDBLite consensus disorder prediction 240 272 - -
Cmo18g01188 297 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Cmo18g01188 297 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Cmo18g01188 297 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355|GO:0043565
Cmo18g01188 297 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Cmo18g01188 297 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Cmo18g01188 297 SMART HOX_1 82 143 IPR001356 GO:0003677
Cmo18g01188 297 MobiDBLite consensus disorder prediction 180 272 - -
Cmo18g01188 297 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Cmo18g01188 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 297 IPR045224 GO:0003700
Cmo18g01188 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 297 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02884 Cmo18g01188 CCT
Cmo04g02884 Cmo18g01188 ECH
Cmo04g01722 Cmo18g01188 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00786 Cmo-Chr16:3982870 Cmo18g01188 Cmo-Chr18:11928384 3.20E-38 dispersed
Cmo18g01188 Cmo-Chr18:11928384 Cmo04g00899 Cmo-Chr4:4526610 7.41E-42 dispersed
Cmo15g00296 Cmo-Chr15:1395440 Cmo18g01188 Cmo-Chr18:11928384 1.58E-72 wgd
Cmo18g01188 Cmo-Chr18:11928384 Cmo04g01722 Cmo-Chr4:8724214 0 wgd
Cmo18g01188 Cmo-Chr18:11928384 Cmo04g02884 Cmo-Chr4:20528681 2.30E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11559 PF00046 Homeodomain 2.90E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01188 K09338 - csv:101221595 530.791