Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01199 ATGGAATTCATCGATTTCTATACGATCTGTGATCTTGTGGTAGTCTTCACTTTCTTGTTTCGAAGCCAAGTTGAAGTAGCGACTCGAGAAGGTAAGGCACTGGATGGTGTTTCGGATTCGGGGGTTGTGTCTCGGGTAGTGACCGAATCGAAGTGGACGAAGAAGCAGAAGAACAACAAAGAACAGGTTGAAACTGTGGAAGAGGAAACTGGCTGTTGGATTGCTCTGAGGATTTTTCGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATTAGTGGGACTAGTATTAACTATGCTGAAAGCAAGTCTACAGTGGATTCGAGTAGAGACCAGCCGACGCCTCAAGAAATATCTTCTACAAACACAAGTATGAGTAATGCAGAAAGTAATTCATCCACTTCCAAACTAGAAGAGGAACTCAAAATATCTCCTCATCTACGGAAATTTTCTTTCAATGATCTTAAGTTGGCGACGAGGAACTTCAGACCGGAGAGTCTTCTTGGTGAGGGCGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAACGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACGCTCAACCATGATGGTCTTCAAGGCCATAAAGAGTGGATGGCTGAGGTGAATTTTCTTAGTGATCTCAAACATCCCAACTTGGTCAAACTTATCGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCCAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTTTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCTAAGGGTCTTGCTTTTCTTCACGAAGAAGCGAAAAGGCCGGTTATATATCGTGATTTCAAAACATCTAACATCCTATTAGACGCCGAATACAATGCCAAGCTTTCTGATTTCGGACTTGCAAAAGATGGCCCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTAATGACTGGACATCTTACATCAAGAAGTGATGTGTATAGTTTCGGAGTCGTTCTTCTTGAAATGTTAACTGGCAGAAGATCCATGGACAAAAACCGTCCTAACGGTGAACATAATCTTGTCGAGTGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGGCATTTCTCAATAAAAGGTGCTCAAAAGGCAGTACAATTGGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCCTTAATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCCGACCGCGTCCGATCGAGCCCAATGGCGAGAAATGGCTACCACACAGCTGCAGGACCAGTTCCGAAGAACGGGCAGCAACTACGCAGCCATTCAATCGCCAATGGATCTCATGCTTCTCCATATCATCAGCAGCAGCAGCAACCCCATCCATCTCCAAAACCCAATGTCAAACCCTGA 1569 44.49 MEFIDFYTICDLVVVFTFLFRSQVEVATREGKALDGVSDSGVVSRVVTESKWTKKQKNNKEQVETVEEETGCWIALRIFRSCISSRSKVDSSISGTSINYAESKSTVDSSRDQPTPQEISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVKLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRVRSSPMARNGYHTAAGPVPKNGQQLRSHSIANGSHASPYHQQQQQPHPSPKPNVKP 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11991198 11995176 - CmoCh18G011990.1 Cmo18g01199 402972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01199 522 SMART serkin_6 163 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01199 522 SUPERFAMILY Protein kinase-like (PK-like) 139 443 IPR011009 -
Cmo18g01199 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Cmo18g01199 522 Gene3D Phosphorylase Kinase; domain 1 121 248 - -
Cmo18g01199 522 MobiDBLite consensus disorder prediction 469 522 - -
Cmo18g01199 522 ProSitePatterns Protein kinases ATP-binding region signature. 169 201 IPR017441 GO:0005524
Cmo18g01199 522 MobiDBLite consensus disorder prediction 486 514 - -
Cmo18g01199 522 PANTHER OS01G0588500 PROTEIN-RELATED 95 510 - -
Cmo18g01199 522 Gene3D Transferase(Phosphotransferase) domain 1 249 465 - -
Cmo18g01199 522 Pfam Protein tyrosine and serine/threonine kinase 167 443 IPR001245 GO:0004672|GO:0006468
Cmo18g01199 522 CDD STKc_IRAK 169 446 - -
Cmo18g01199 522 MobiDBLite consensus disorder prediction 103 135 - -
Cmo18g01199 522 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 95 510 - -
Cmo18g01199 522 MobiDBLite consensus disorder prediction 103 139 - -
Cmo18g01199 522 ProSiteProfiles Protein kinase domain profile. 163 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02882 Cmo18g01199 CCT
Cmo04g01710 Cmo18g01199 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01710 Cmo-Chr4:8664886 Cmo18g01199 Cmo-Chr18:11991198 0 dispersed
Cmo07g01041 Cmo-Chr7:5274106 Cmo18g01199 Cmo-Chr18:11991198 5.48E-147 dispersed
Cmo10g00567 Cmo-Chr10:2578452 Cmo18g01199 Cmo-Chr18:11991198 1.47E-176 dispersed
Cmo11g00526 Cmo-Chr11:2569011 Cmo18g01199 Cmo-Chr18:11991198 2.12E-180 dispersed
Cmo18g01199 Cmo-Chr18:11991198 Cmo02g00799 Cmo-Chr2:4928915 7.15E-162 dispersed
Cmo15g00299 Cmo-Chr15:1402587 Cmo18g01199 Cmo-Chr18:11991198 0 wgd
Cmo18g01199 Cmo-Chr18:11991198 Cmo04g02882 Cmo-Chr4:20514478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75083 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01199 - - csv:101203209 909.442