Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01205 ATGGAAGACGACGGCGAGCAAGAGATATGGAGTTGGGGGGCAGGAACCGACGGGCAGCTGGGCACCGGGCGACTCGAGGATGAGACCCTCCCTCAACTCCTCCGGATTGCGTCACTCTCCTCTGGCGCCGTCGTCTCATCCGTGTCCTGCGGCGGCGCTCATGTCATCGCTTTGACTGCTGGAGGAGGGGTGCTTACATGGGGAAGAGGAAATTCAGGGCAGTTGGGGCTAGGGGACATGGTGAGCAGCTTAGAACCTAAGCCAGTGGTGGGGTTGGAAGGCTGCTTCATAACCCATGTCTCCGCGGGATGGAGCCATTCTGGGTTTGTTTCAGATGAGGGAAAGGTTTATAGTTGTGGGGATGGCTCATTTGGGCAGTTAGGGCATGGGGATTTCCAGTCACGTTGCTTCCCTGATGAACTCTTGTTTTTCTCTGATAAACATGTTGATCAGATTGCATGTGGGATGCGCCACTCGCTTGCATTGGTGAAAGGTTGTTGTGGTGCTCAAGTTTATGGATTTGGAGCTGGGAAGCGAGGTCAATTGGGCATCTCCAACAAGATTCAATCTGTTAATCTTCCCGTTCTGTCTTCAGAATTGGAAGCTGCTGAAATAGTTGGCATAGCTGCAGCTGGAGATCACAGTGCTGCGTTGTCCACTGATGGGCGTCTCTTTACGTGGGGACGAGGATTCGGAACGAATTCGGACGCATTTTCTCCTCAATATCTACCTTCACCATTGTCGTTCAGGAAAGTTGCTCTTGGATGGAACCATGCATTAGTTTTAACTGATGAAGGGGAACTTTATATGCTTGGTGGCAAACATCACGGAACCTTGAGCGATTCTGAAAGGCTCAATGTCACGAATTCTCTGCCCGGTGCTACAGAGGAAGACAATTTCCGAGCAGTCTGTGGAATAAAAATCTTGGACATTGCAGCCGGGGCCGAGCATTCTGCAGTCGTTACAGGCATGATGGTTTTCCAAAAGGATGGAGCTGTAAAGACATGGGGTTGGGGGGAGCATGGTCAGCTGGGTTTGGGAGACACATGTGACCACACCAACCCACAAACAGTTACTCTGCGCCGCAAACTTGAGAGTGCTGCTTTCGACGTCAAAGTTTATTCTGGCAGCGGCTTTACTGTTGCCATTACAACGCCCCATGCGGCTGCAAAGCTCACCAATTGA 1185 51.48 MEDDGEQEIWSWGAGTDGQLGTGRLEDETLPQLLRIASLSSGAVVSSVSCGGAHVIALTAGGGVLTWGRGNSGQLGLGDMVSSLEPKPVVGLEGCFITHVSAGWSHSGFVSDEGKVYSCGDGSFGQLGHGDFQSRCFPDELLFFSDKHVDQIACGMRHSLALVKGCCGAQVYGFGAGKRGQLGISNKIQSVNLPVLSSELEAAEIVGIAAAGDHSAALSTDGRLFTWGRGFGTNSDAFSPQYLPSPLSFRKVALGWNHALVLTDEGELYMLGGKHHGTLSDSERLNVTNSLPGATEEDNFRAVCGIKILDIAAGAEHSAVVTGMMVFQKDGAVKTWGWGEHGQLGLGDTCDHTNPQTVTLRRKLESAAFDVKVYSGSGFTVAITTPHAAAKLTN 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12024370 12027321 + CmoCh18G012050.1 Cmo18g01205 402978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01205 394 Pfam Regulator of chromosome condensation (RCC1) repeat 170 218 IPR000408 -
Cmo18g01205 394 Pfam Regulator of chromosome condensation (RCC1) repeat 113 162 IPR000408 -
Cmo18g01205 394 Pfam Regulator of chromosome condensation (RCC1) repeat 330 383 IPR000408 -
Cmo18g01205 394 Pfam Regulator of chromosome condensation (RCC1) repeat 62 109 IPR000408 -
Cmo18g01205 394 Pfam Regulator of chromosome condensation (RCC1) repeat 8 58 IPR000408 -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 62 113 IPR000408 -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 169 221 IPR000408 -
Cmo18g01205 394 Gene3D - 244 389 IPR009091 -
Cmo18g01205 394 SUPERFAMILY RCC1/BLIP-II 7 386 IPR009091 -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 7 61 IPR000408 -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 386 IPR000408 -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 114 165 IPR000408 -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 324 IPR000408 -
Cmo18g01205 394 Gene3D - 1 243 IPR009091 -
Cmo18g01205 394 PRINTS Chromosome condensation regulator RCC1 signature 326 347 IPR000408 -
Cmo18g01205 394 PRINTS Chromosome condensation regulator RCC1 signature 64 80 IPR000408 -
Cmo18g01205 394 PRINTS Chromosome condensation regulator RCC1 signature 8 24 IPR000408 -
Cmo18g01205 394 PRINTS Chromosome condensation regulator RCC1 signature 255 273 IPR000408 -
Cmo18g01205 394 PRINTS Chromosome condensation regulator RCC1 signature 45 58 IPR000408 -
Cmo18g01205 394 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 152 162 IPR000408 -
Cmo18g01205 394 PANTHER OS01G0777800 PROTEIN 9 378 - -
Cmo18g01205 394 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 378 - -
Cmo18g01205 394 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 222 265 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01205 - - - cmax:111467367 734.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01205 Cmo-Chr18:12024370 Cmo07g01310 Cmo-Chr7:7326084 2.47E-09 dispersed
Cmo18g01205 Cmo-Chr18:12024370 Cmo01g01025 Cmo-Chr1:8025658 3.27E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01205 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.392006 0.0 0.219378 0.0 0.0 0.0