Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01212 ATGCCTTCTCCACCCTCCTCTGTTACTGTCTCCGCCGTCGTTCTGTTCCTCCTCCACCTCTCTCCTCTGTTTTCCACCGCTGACCCTTCTAGCTCTCCATGTCCGCCGTTCTCTTCCGACCCCGTTTTCCCATTTTCATCTCGTCCCGGTCACGGCCATCCTTCTTTTCAGGTGCGTTGCTCTTCTCCTCACTCTGTTCTCACCATTAATGGGATTTCCTTTTCTCTTCTGAGCTTCAATACGACCTCCACTACCCTCCTTCTTTCCCCTCTTCCACACAATGCCACTTACACTTCCCATGGATCGAACCACCGCTGTTTATCTCGTTTCAGTTCTATTCCCAGCCGTTCGATTAATCTCTCTGGCTCCCCGTTCCGAATCTCAGATGGGTATTGTTCTCGGCTCTCTCTTCTCATCCCCTGTTCGCCGCCGCATCTTCCCAACTGCAGTCATTGTCCGTGGGAGTGTAGTCTTATTAAGAAGCCACTTAATTTGCTCCATGGATGTGGCGTTCAGCATCAGTCGTTCTTGGAGCAAGGTTGTCAAGGCGAGGTGTTGGAGTATTTAGACAGGATTCTTAGATTGGGGCTTGAAATCGAGTGGGATACAGATCAAGATCCTTTCTTTATTAAGTGTACTGATTGTAAAGCTAAAAATGGTGTTTGCGGCTTCAATTCATCAGACCCAGATAGGCATTTCATTTGCTATCATGCTCAAACTCGATATACATATCCTAATAGAATCGCGATTTTCTCCTCTGTTTTTGCGTTGATGTGCTTGTTACTGGTTGTCGCCGTCACGACAGCTTTTTTCCGGTCGAGATGGTTGAGATCTCTCGCCATTGAAGTAGACCCGACAACCCAGTTCCTCAGTCGTCATCGTTCACCTAATCTTCTCCCGCCGGTTTTCCCCTACGAAGAATTAGAATCCTCGACGAATCGATTCGACCCGAAGAGGAAACTGGGCGACGGCGGATTTGGGTCTGTGTATTTGGGTCAGCTCAACGATGGACGATTAGTGGCGGTGAAGTATCTTCACAAGCACCATGCTGCCGCTCCTTCCGGCAGGGCGCTCTTCACCAAGTCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCGAATCTTGTTAGGTTACATGGGTATTGTAGCGACCCAAGAGGGCTTATTCTTGTTTATGATTATGTACCAAATGGGACGCTTGCCGACCATCTCCATGGTTGTAATAGCTTGTACCGGAAGGGATCTCTGTCATGGCAAGTAAGGATTGATATTGCTCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGTGCCGCCGATTGTTCACAGGGACATTACCTCTTCGAACATTTTTATGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCGAGGCTGTTGGTTTTTTCAGACACGACGTCGGCTTCATCTGGGTATGTCTGCACCGGACCTCAGGGGACACCCGGTTACTTGGATCCGGATTATCACCGGTCGTTCCGGTTGACGGAGAAGAGTGACGTGTACAGCTTTGGAGTGGTGTTGTTGGAGCTGATTTCTGGTTTAAAAGCGGTGGATCAGAGCCGAGAGAGACGAGAAATGACGTTGGCGGATCTGGTCGTGTCGAAGATCCAAATGGGTCAGCTCCATCAGGTGGTGGACTCTGTTTTGGGTATCGACGGCGAGGTAATCAACGGCGTTGAGGCAATGGCAGAGCTGGCTTTCCGGTGTGTAGCGGCGGACAAGGACGACCGCCCCAACGCCAAGGAGATCGTGGAGGAGCTCCGGCGGATTCGTAACTGCTGCAGTCGTGGAGGTGTCCGGTCGTCGATTTCAAATTGA 1863 49.54 MPSPPSSVTVSAVVLFLLHLSPLFSTADPSSSPCPPFSSDPVFPFSSRPGHGHPSFQVRCSSPHSVLTINGISFSLLSFNTTSTTLLLSPLPHNATYTSHGSNHRCLSRFSSIPSRSINLSGSPFRISDGYCSRLSLLIPCSPPHLPNCSHCPWECSLIKKPLNLLHGCGVQHQSFLEQGCQGEVLEYLDRILRLGLEIEWDTDQDPFFIKCTDCKAKNGVCGFNSSDPDRHFICYHAQTRYTYPNRIAIFSSVFALMCLLLVVAVTTAFFRSRWLRSLAIEVDPTTQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHAAAPSGRALFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGCNSLYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFMEKDMRIKVGDFGLSRLLVFSDTTSASSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMTLADLVVSKIQMGQLHQVVDSVLGIDGEVINGVEAMAELAFRCVAADKDDRPNAKEIVEELRRIRNCCSRGGVRSSISN 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12059910 12061772 + CmoCh18G012120.1 Cmo18g01212 402985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01212 620 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Cmo18g01212 620 SUPERFAMILY Protein kinase-like (PK-like) 295 602 IPR011009 -
Cmo18g01212 620 Gene3D Transferase(Phosphotransferase) domain 1 398 612 - -
Cmo18g01212 620 ProSitePatterns Tyrosine protein kinases specific active-site signature. 446 458 IPR008266 GO:0004672|GO:0006468
Cmo18g01212 620 Gene3D Phosphorylase Kinase; domain 1 290 397 - -
Cmo18g01212 620 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 611 IPR045274 GO:0007166
Cmo18g01212 620 CDD STKc_IRAK 321 605 - -
Cmo18g01212 620 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 24 611 - -
Cmo18g01212 620 Pfam Protein kinase domain 317 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01212 620 ProSiteProfiles Protein kinase domain profile. 315 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01695 Cmo18g01212 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01212 Cmo-Chr18:12059910 Cmo11g00288 Cmo-Chr11:1407876 9.94E-88 dispersed
Cmo18g01212 Cmo-Chr18:12059910 Cmo04g01695 Cmo-Chr4:8597339 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75084 PF00069 Pkinase 3.70E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01212 - - csv:101206111 1029.62