Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01213 ATGGGTAATACGTATTGTGTTTTGTTCGGCTGCGTGGAGCAAGCGAGTGTGGGGGTGGTTGAGAGATGGGGAAGGTTTGAAAAATTGGCTCAGCCTGGGCTCCATTTCTTCAACCCTTTTGCCGGTCAGTGTCTTGCGGGATTCCTCTCCACTAGGATTTCCTCCCTCGATGTTCGTATTGAGACCAAGACCAAGCTTGGCGGTACTGTAGATGGGGTTTATGATAATGTCTTTGTGCAATTGCTGTGTTCAATTCAGTATCGGGTCATCAAAGAAAATGCTCATGATGCATTTTATGAGTTGCAAAATCCCCAAGAACAGATTCAGGCCTACGTGTTTGATGTGGTTCGAGCCGTTGTCCCTAGAATGAATTTGGATGAACTCTTTGAACAAAAGGGTGAAGTTGCTAAAGCTGTATCGGAGGAACTTGAGAAGAACTTAAGTGTAACTTGGGAAGTATGCTTAAAACATAGGTTTAGATATAGAATTTTGTTGGGACCTCCTAATATGATCGACACTAGGATTTCAACACACATTCTCATTTTGAATCAGGTGATGGGAGACTATGGATATAGTATAGAGCACATTTTAATGGTCGATATAATACCGGATGCTTCGGTGCGCAGCGCAATGAATGAGATTAATGCAGCTCAAAGGCTTCAACTTGCTAGTGTATACAAAGGCGAAGCGGAGAAGGTGCTCCTAGTAAAAAAGGCAGAAGCTGAAGCTGAAGCGAAATACCTAGGCGGGGTCGGTGTGGCGAGGCAGAGACAGGCAATCACAGATGGTCTGAGAGAGAATATCTTGAACTTCTCCCATAGGGTGGAAGGTACCTCAGCTAAAGAGGTCATGGATCTGATCTTGATTACTCAATATTTTGACACCATCAAGGACCTTGGAAATTCATCCAAGAACACAACTGTGTTCATTCCTCACGGTCCGGGCCATGTTAGAGATGTCAGCGACCAAATACGCAGCGGGATGATGGAGGCTGCGAGTGCACAGGCAGCGCTCACTAATGATGAGGTGAACATCAATTTACTCCATTGA 1050 44.95 MGNTYCVLFGCVEQASVGVVERWGRFEKLAQPGLHFFNPFAGQCLAGFLSTRISSLDVRIETKTKLGGTVDGVYDNVFVQLLCSIQYRVIKENAHDAFYELQNPQEQIQAYVFDVVRAVVPRMNLDELFEQKGEVAKAVSEELEKNLSVTWEVCLKHRFRYRILLGPPNMIDTRISTHILILNQVMGDYGYSIEHILMVDIIPDASVRSAMNEINAAQRLQLASVYKGEAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHRVEGTSAKEVMDLILITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDVSDQIRSGMMEAASAQAALTNDEVNINLLH 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12062536 12066017 + CmoCh18G012130.1 Cmo18g01213 402986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01213 349 SUPERFAMILY Band 7/SPFH domain 49 147 IPR036013 -
Cmo18g01213 349 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 336 - -
Cmo18g01213 349 CDD SPFH_like_u4 11 328 - -
Cmo18g01213 349 SMART PHB_4 7 215 IPR001107 -
Cmo18g01213 349 Gene3D Band 7 domain 48 217 IPR036013 -
Cmo18g01213 349 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 4 1 336 - -
Cmo18g01213 349 Pfam SPFH domain / Band 7 family 12 231 IPR001107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01213 - - - csv:101208816 512.301
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00187 Cmo18g01213 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00187 Cmo-Chr16:837076 Cmo18g01213 Cmo-Chr18:12062536 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
Vvi16g491 Blo06g01096 Blo15g00140 . . . Bpe07g00971 . . Cmo16g00187 Cmo18g01213 . . . . Sed01g3678 . Cpe14g00148 Bhi01g01243 Tan01g0359 Cmetu09g0530 . Hepe07g0231 Mch10g0232 . Cla01g00504 Cam01g0524 Cec01g0517 Cco01g0541 Clacu01g0526 Cmu01g0499 Cre09g2010 . . . . Lsi05g01309 Csa05g00542 . Cme06g00919 . . . Bda15g00756 . Bpe12g00397 Bma08g00358 . . . . Cma16g00180 . Car16g00156 Car18g01100 Cpe09g00138 . Bhi12g00579 . . . . . . . . . . . . . Lsi09g00544 Csa03g01632 Chy06g00870 Cme09g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003247 2 2 2 1 2 2 2 1 2 1 1 2 1 2 1 2 2 1 2 2 2 2 2 2 2 2 1 1 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01213 Cmo_Chr18 FPKM 13.10572 15.502536 15.828228 14.453306 12.013047 8.114848 11.350794 16.608004 18.676178 20.904566