Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01215 ATGGAGGAGGAGAAAGAAGCCGGAGTTTCTAGGTTTACAGTTACCAACAATGAAGCCCTAGACACCTTCCAGTTAGCTCCCAGAACAGAAACCCTAAAACCCACCAATGAGCCTAAAGTAACGGCTACGACCACACCGGCGAGCATCCCAACCACTGCACCACCACCGGGATTCACGGCGGTTTCCACTACAGATACAAAGAAGAAGAGAGGTCGGCCGAGAAAGTACGAGGCGGATGGGAAGCGGTCACTGACATTAGCGTTGTCTCCGATGCCGATATCATCGTCAATTCCACTGACCGGCGAGTTCCCGAACTGGAAACGTGACAACGACATGTCTCTAGCGATAATCAAAAAGCCACAGAGATTTGAGTTTGAGAATCCGGGTCAGAAACTTGCATACTCTGTTGGTGCTAATTTTACTCCCCATGTTATCACTGTCAATGCTGGAGAGGACATTACTATGAAGATCATGTCTCTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGCACAATTTCAAATGTCACACTTCGACAGGCCACTTCTTCCGGAGGTACCTTAACGTACGAGGGTTGTTTTGAAATACTCACATTGACTGGATCGTTTATGCCGACGCAGAATGGAGCGACGAAGAGTAGATGTGGTGGGATGAGCGTTTCCCTAGCGGGTCAAGATGGACGAGTTGTCGGCGGTGGACTTGCTGGGTTGTTGGTAGCTGCTGGTCCTGTTCAAGTTGTGGTAGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGGCCACAACCATATTCTTTCCTCCCATCAATACCATCAGCGGTGAAGAAATGAAGGCGGCATACACCGGTGGTATCAAGCCTATTGTCACCACACCGTCCAATCAAGAACATAAGCCACCATCGCCAAGCGCAGTGACACCCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCAGAACAAGAACCCAAAACTCAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1041 48.41 MEEEKEAGVSRFTVTNNEALDTFQLAPRTETLKPTNEPKVTATTTPASIPTTAPPPGFTAVSTTDTKKKRGRPRKYEADGKRSLTLALSPMPISSSIPLTGEFPNWKRDNDMSLAIIKKPQRFEFENPGQKLAYSVGANFTPHVITVNAGEDITMKIMSLSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGCFEILTLTGSFMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNEATTIFFPPINTISGEEMKAAYTGGIKPIVTTPSNQEHKPPSPSAVTPFKISSTDNLPLSEQEPKTQSQSNCEVSC 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12076006 12079934 - CmoCh18G012150.1 Cmo18g01215 402988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01215 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 255 IPR005175 -
Cmo18g01215 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 262 - -
Cmo18g01215 346 Gene3D - 142 272 - -
Cmo18g01215 346 ProSiteProfiles PPC domain profile profile. 137 281 IPR005175 -
Cmo18g01215 346 MobiDBLite consensus disorder prediction 20 48 - -
Cmo18g01215 346 CDD DUF296 141 255 IPR005175 -
Cmo18g01215 346 MobiDBLite consensus disorder prediction 20 76 - -
Cmo18g01215 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 325 - -
Cmo18g01215 346 MobiDBLite consensus disorder prediction 298 346 - -
Cmo18g01215 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 325 IPR039605 GO:0003680
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01022 Cmo18g01215 CCT
Cmo15g01444 Cmo18g01215 CCT
Cmo02g01022 Cmo18g01215 ECH
Cmo15g01444 Cmo18g01215 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02040 Cmo-Chr14:14913849 Cmo18g01215 Cmo-Chr18:12076006 3.83E-88 dispersed
Cmo15g01444 Cmo-Chr15:9798955 Cmo18g01215 Cmo-Chr18:12076006 3.17E-105 dispersed
Cmo16g01081 Cmo-Chr16:7648276 Cmo18g01215 Cmo-Chr18:12076006 2.05E-83 dispersed
Cmo18g01215 Cmo-Chr18:12076006 Cmo01g02098 Cmo-Chr1:14534772 2.45E-57 dispersed
Cmo03g01172 Cmo-Chr3:9211798 Cmo18g01215 Cmo-Chr18:12076006 2.32E-18 transposed
Cmo15g01234 Cmo-Chr15:8497053 Cmo18g01215 Cmo-Chr18:12076006 1.51E-92 wgd
Cmo18g01215 Cmo-Chr18:12076006 Cmo02g01022 Cmo-Chr2:6215634 1.73E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01215 - - csv:101217222 534.643