Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01218 ATGGATTCCGTCGGCGACTCTCCGATGAAAACTCCGGCAAATCAGTTTTCTCTCTCAAACTTCCTCTCAGATAGTGAAGTAATTTCGCAATTGGTGGATGCTCTGGTAGGTAGGAGCAATTTCACTTTCGGTGTTCGGCACTCCCTTCGAACCTTGAAAGTGAACTCCAGCCCGAATAGGGGAGCCAGATCGGATAAGGAAATTAGGGAAAGATTTTATGGAAACTTGATCAACTCAACGGCACCGATTTCCGGTGACGGTAGCATTGCCCAAATGTTCGATAAGGTGCTCGAGAAGGAGTTCCCTGACAATGATCTGCCTGAAGGTTCGGGCGGAAGCAGCTTTAATAACAGTGTCGCTGATCAGGAGGCAGAACTGGAGACAGTAGCCAAAATCACTCATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAATGGGACTAGAGCATTCCAATTTCAGGATGTTTTCTCTCTAGAAAATGAAGAATCTGATGATGTTACGACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAATCAAAGTATCCAGTACTTCAAGTAGATTTGAGACTGATTTCAGACTTGGTTGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTTTAGGCCAACCGGTTATTGTGGGCTATCTTCTTGCGGGGTCAATTATTGGACCAGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGGGCTGTTGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTCTTATGTGGCATAATTGCCATGTTAAGTGGAGCTAAATTGTCCGAGGGTGTATTTGTCGGTTCATTTCTATCAATGTCATCGACAGCAGTGGTGGTGAAGTTCTTGGTAGAACGGAATAGCAGTAATACTCTTCATGGTCAGGTTACTATTGGAACGCTTATCTTACAGGACTGTGCCGTTGGTTTGTTATTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTATTTTAGGAATGATATCTATGGGAAAGTTGCTACTGGTGTTGTCAGTATATCTCACAGTCGCGTCCATTTTGTCGTGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAGCTGTCGTCTCAAACAAATGAGTTGTATCAGCTTGCTGCTGTGGCATTTTGCTTGCTGTCTGCCTGGTGCAGTGATAAGTTGGGACTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACCGACTTTGGTCAACATACTTTAGATCAGGTGGAACCAATTCGCAATTTATTTGCAGCTTTGTTCCTTTCGAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGATATTTTGCTAGCATCTGTCATGCTGGTTGTGTTTGTGAAGACAGCAGTTGTTACCGTTGTTGCAAAGGCATTTGGATACAGTATAAGGACTTCTTTTCAGGTTGGAGTCATGCTTGCTCAAATTGGAGAGTTTGCTTTTGTTCTCCTAAGCCGTGCCTCAAATCTTCATCTCATTGGGGGGAAAGTTTATCTGCTACTTCTTGGAACAACAGCACTTAGTCTAGTGACCACCCCTCTTGTGTTCAAATTGGTACCTGCTGTGCTGAATTTAGGGGTTCTCATGCATTGGTTCCCCTCTGAAAACATCATTCAAAGCGAGCGGCAGCCAACCTTAAGCTCATCTGCCAAACCCAAACCAATCAAATTGAAAACGCCATCACTTCCTCACTTCTCCTCCGCTGCCGGGCGTCCACCTGCGTCTCCGCGCGGCGGAGTCACCGTCATGAGGCTTGTGGTGCCTCTGCAAGGCGTTGTCCAAGGCCGTGGAGGTCTCTTGTTGGGCTCTCTCATTCCCTGTGCTCTCTTCTACTTCCTCCAACTTTATCTCAAGCGAAATCGTTCTCCCAACTCTGACTCCTCCTCGAATTCTCCGTCCCATTCTCACTCTTCCTCTAACCTCGTCGACCTCAACCGTTCGTCCTCTCGCTCTAATCTACTCACGCGCGGATCCGTTGGTCGAGTTCGCCTTTCTTCTCGAGCCAGTTCCATTGCGAAGCCCAATAACTGCCCCTACTATATTGGATTGGATCGCGTTCGGGAGGATCCTTACGATAGGTTGGATAATCCGAATGGGATTATTCAGCTTGGGTTGTCCGAGAATAGGTTGTGCTTTGATTTGCTTGAGAAATGGATATCGGAGAATTATACTGGTTCCGTTGGTGGAGGCAATAACGTCGAGTTGAATATTATGGGGATGGCCACTTACCAGCCTTTCGATGGATTGTGGGAGCTGAAAATGGCTATGGCAGGTTTCATGTCTCAGGTAATGGGTGGTGGAGTGGCTTTTGATCCATCACAATTATTGTTAACATCTGGTGCCACTGCCGCGGTCGAGGTACTCTGTTTCTGCTTAGCAGACCCTGGAAATGCATTTCTTATTCCAACTCCTTATTATCCTGGTTTTGATAGAGATGTGAAGTGGAGAACTGGAGTTGATTTAATACCAGTTCACTGTCGTAGTGCTGACAACTTTAACTTGAACATCACTGTACTAGAGCAAGCATACAATCAAGCTAGGAAACGAGGAATAAAAGTTCGGGGAGTTCTCTTATCTAACCCTGCAAATCCAGTTGGCAACATGTTGCCCCGAGAAATGCTATACAGTATTTTAGATTTTGCCCAAGAGAAGAATATCCATGTTGTATCCGATGAGATATTTGCAGGGTCAGTTTATGGAAACGACGAGTTTGTGAGCATGGCTGAAATGATTGATTCAGAAGATATTGACAAGAATAGAGTTCATATAGTGTATGGACTGTCGAAAGACCTCTCTCTTCCTGGCTTTAGAGTTGGTGTCATCTATTCACAAAATGAAAATGTTTTGGCTGCTGCTAGAAAAATGACAAGATTTTGCCCGATTTCCGCTCCAACCCAGCAGCTTGTTACCTTGATGCTTTCGGACAGAACCTTCGTTAATGAATACCTGGAGACGAGCAAAAAGAGAATTCGCGAGATGCATGTTCTTTTCGTTGCTGGTTTGAAACAGTTGGGAATTAAGTGTGCAAAGAGCAGTGCTGGTTTTTACTGCTGGGCTGATATGAGTGGACTGATGAATTCTTATAGTGAGAAAGGGGAGCTAGAATTATGGGAGAAGCTGCTGAATGTAGCTAAAATTAACGCGACTCCTGGATCTGCTTGTCATTGCATAGAACCTGGATGGTTTAGATGTTGTTTCACTACACTTTCACGAGAGGATTTATTGATCGTTATAGAACGGATTAGAAAAATGGCTGTTACGTGCAAATCTCCCAGTTGA 3438 43.98 MDSVGDSPMKTPANQFSLSNFLSDSEVISQLVDALVGRSNFTFGVRHSLRTLKVNSSPNRGARSDKEIRERFYGNLINSTAPISGDGSIAQMFDKVLEKEFPDNDLPEGSGGSSFNNSVADQEAELETVAKITHEKGKKNDSQKANGTRAFQFQDVFSLENEESDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLILGMISMGKLLLVLSVYLTVASILSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVVTVVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLVFKLVPAVLNLGVLMHWFPSENIIQSERQPTLSSSAKPKPIKLKTPSLPHFSSAAGRPPASPRGGVTVMRLVVPLQGVVQGRGGLLLGSLIPCALFYFLQLYLKRNRSPNSDSSSNSPSHSHSSSNLVDLNRSSSRSNLLTRGSVGRVRLSSRASSIAKPNNCPYYIGLDRVREDPYDRLDNPNGIIQLGLSENRLCFDLLEKWISENYTGSVGGGNNVELNIMGMATYQPFDGLWELKMAMAGFMSQVMGGGVAFDPSQLLLTSGATAAVEVLCFCLADPGNAFLIPTPYYPGFDRDVKWRTGVDLIPVHCRSADNFNLNITVLEQAYNQARKRGIKVRGVLLSNPANPVGNMLPREMLYSILDFAQEKNIHVVSDEIFAGSVYGNDEFVSMAEMIDSEDIDKNRVHIVYGLSKDLSLPGFRVGVIYSQNENVLAAARKMTRFCPISAPTQQLVTLMLSDRTFVNEYLETSKKRIREMHVLFVAGLKQLGIKCAKSSAGFYCWADMSGLMNSYSEKGELELWEKLLNVAKINATPGSACHCIEPGWFRCCFTTLSREDLLIVIERIRKMAVTCKSPS 1145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12098474 12110466 - CmoCh18G012180.1 Cmo18g01218 402991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01218 1145 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 979 992 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cmo18g01218 1145 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 628 1140 - -
Cmo18g01218 1145 Coils Coil 882 902 - -
Cmo18g01218 1145 Gene3D - 776 1028 IPR015421 GO:0003824
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 790 806 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 973 997 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 1005 1028 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 849 870 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 903 927 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 756 782 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 827 847 - -
Cmo18g01218 1145 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 939 962 - -
Cmo18g01218 1145 Pfam Sodium/hydrogen exchanger family 201 570 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo18g01218 1145 MobiDBLite consensus disorder prediction 676 700 - -
Cmo18g01218 1145 PANTHER AMINOTRANSFERASE ACS12-RELATED 628 1140 - -
Cmo18g01218 1145 CDD AAT_like 796 1136 - -
Cmo18g01218 1145 Gene3D - 194 577 IPR038770 -
Cmo18g01218 1145 Gene3D Aspartate Aminotransferase, domain 1 742 1133 IPR015422 GO:0003824
Cmo18g01218 1145 Pfam Aminotransferase class I and II 754 1134 IPR004839 GO:0009058|GO:0030170
Cmo18g01218 1145 SUPERFAMILY PLP-dependent transferases 732 1137 IPR015424 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01239 Cmo18g01218 CCT
Cmo15g01239 Cmo18g01218 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01559 Cmo-Chr2:9027622 Cmo18g01218 Cmo-Chr18:12098474 6.91E-155 dispersed
Cmo02g01560 Cmo-Chr2:9028909 Cmo18g01218 Cmo-Chr18:12098474 7.33E-06 dispersed
Cmo10g00738 Cmo-Chr10:3378959 Cmo18g01218 Cmo-Chr18:12098474 0 dispersed
Cmo11g00694 Cmo-Chr11:3352763 Cmo18g01218 Cmo-Chr18:12098474 8.17E-69 dispersed
Cmo12g00576 Cmo-Chr12:3555280 Cmo18g01218 Cmo-Chr18:12098474 0 dispersed
Cmo18g01218 Cmo-Chr18:12098474 Cmo10g00728 Cmo-Chr10:3330053 1.21E-139 dispersed
Cmo19g00518 Cmo-Chr19:6093556 Cmo18g01218 Cmo-Chr18:12098474 2.87E-29 dispersed
Cmo15g01239 Cmo-Chr15:8531776 Cmo18g01218 Cmo-Chr18:12098474 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01218 - - csv:101207607 943.34