Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01222 ATGACGGAGGTTTACTGTAGAATGCCAAGTGATGATGATATAGATTCGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAAATGAGGCGATTAGCAGCAGTACCGTCGGCGAAACCCTCGCCATCGCCGTCGACCAGTCACCACCACCGGAAGGAGAATCAAACTGAGAGTTCCGGTTTTGAGAAGAAGCGTGTTCGGAAGACGGACGGCGACGACACTCCGGAGGTTTTAACGTCTTCCTCTTCGGGGGAGGACGTGAACGCTGTAGTTGCTTCATCGTCGGTACCTCAGCCGGTGTTCGGGATGATGTCGGTTTCTGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCCATATTGGTCCAGAAAGTCGACTACCGGTGCATTTCTTCGCCGTCTATGATGGACATGGAGGCCCTCACGTGGCAACACTATGTATGGAGAAGATGCACGTGTTAGTACAGGAGGAATGGGCGCGCGTGGTGAATACGCGCGAGGAAACTGAGAGTATCGGTGGAGGAAGTAGCGCGGCGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGGCGGAGCTTTGAGAGAATGGATGAAGTGGCACTCAATACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGCTTGCCATCCAATGGAGGTGGCTCTCGGTGGTTCCACCGCCGTTGTCGCTGTGCTCACGCCGGAACATATAATCGTTGCCAACTGCGGTGACTCACGCGCCGTCCTCTGTCGAGGAGGAAGGGCCATTCCGCTTTCCAATGATCACAAGCCTGATAGAATTGATGAACTAGCAAGGATCGAAGCTGCAGGAGGACAGGTGATTTTCATAAATGGAGCTCGGGTTAAAGGCATCCTTGCAATGTCCCGTGCAATTGGTAATAGTTTCTGCTATTATGGATGTTGA 936 54.17 MTEVYCRMPSDDDIDSPAKCRERRRRRIEMRRLAAVPSAKPSPSPSTSHHHRKENQTESSGFEKKRVRKTDGDDTPEVLTSSSSGEDVNAVVASSSVPQPVFGMMSVSGRSREMEDAVSVSTCHIGPESRLPVHFFAVYDGHGGPHVATLCMEKMHVLVQEEWARVVNTREETESIGGGSSAAEEEATWRRVMRRSFERMDEVALNTCACGSVGGQCACHPMEVALGGSTAVVAVLTPEHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRIDELARIEAAGGQVIFINGARVKGILAMSRAIGNSFCYYGC 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12126621 12128650 + CmoCh18G012220.1 Cmo18g01222 402995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01222 311 Pfam Protein phosphatase 2C 102 306 IPR001932 -
Cmo18g01222 311 CDD PP2Cc 101 303 IPR001932 -
Cmo18g01222 311 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 41 305 - -
Cmo18g01222 311 SUPERFAMILY PP2C-like 92 308 IPR036457 -
Cmo18g01222 311 SMART PP2C_4 91 310 IPR001932 -
Cmo18g01222 311 Gene3D - 89 308 IPR036457 -
Cmo18g01222 311 ProSiteProfiles PPM-type phosphatase domain profile. 101 311 IPR001932 -
Cmo18g01222 311 PANTHER ALPHABET, ISOFORM E-RELATED 41 305 - -
Cmo18g01222 311 MobiDBLite consensus disorder prediction 1 33 - -
Cmo18g01222 311 MobiDBLite consensus disorder prediction 47 75 - -
Cmo18g01222 311 MobiDBLite consensus disorder prediction 1 87 - -
Cmo18g01222 311 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00172 Cmo18g01222 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01222 Cmo-Chr18:12126621 Cmo01g00655 Cmo-Chr1:3349903 6.97E-56 dispersed
Cmo16g00172 Cmo-Chr16:778718 Cmo18g01222 Cmo-Chr18:12126621 1.59E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01222 K14497 - csv:101206634 461.07