Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01239 | ATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGCACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCAGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCTGCCGCCCGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTCTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA | 573 | 56.72 | MSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDALLSYRIPSSTSPSDIRAAAALAAAARHPDTAPAPAPAAHTRPVGGAGFSSDATAAAAAAREFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYSQ | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 12227522 | 12228094 | - | CmoCh18G012390.1 | Cmo18g01239 | 403012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01239 | 190 | SMART | rav1_2 | 21 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01239 | 190 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE | 11 | 189 | - | - | |
Cmo18g01239 | 190 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo18g01239 | 190 | Gene3D | AP2/ERF domain | 21 | 78 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo18g01239 | 190 | CDD | AP2 | 20 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01239 | 190 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01239 | 190 | PRINTS | Ethylene responsive element binding protein signature | 59 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01239 | 190 | SUPERFAMILY | DNA-binding domain | 21 | 78 | IPR016177 | GO:0003677 | |
Cmo18g01239 | 190 | MobiDBLite | consensus disorder prediction | 105 | 125 | - | - | |
Cmo18g01239 | 190 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cmo18g01239 | 190 | Pfam | AP2 domain | 20 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo18g01239 | 190 | MobiDBLite | consensus disorder prediction | 166 | 190 | - | - | |
Cmo18g01239 | 190 | MobiDBLite | consensus disorder prediction | 169 | 190 | - | - | |
Cmo18g01239 | 190 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 11 | 189 | - | - | |
Cmo18g01239 | 190 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 77 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo15g01262 | Cmo18g01239 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g01051 | Cmo-Chr16:7356312 | Cmo18g01239 | Cmo-Chr18:12227522 | 8.40E-47 | dispersed | |
Cmo18g01239 | Cmo-Chr18:12227522 | Cmo06g00454 | Cmo-Chr6:2168177 | 1.65E-43 | dispersed | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo18g01239 | Cmo-Chr18:12227522 | 1.20E-34 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11563 | PF00847 | AP2 | 8.80E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01239 | - | - | cmos:111449416 | 309.686 |