Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01239 ATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGCACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTAGCTGCCCTCGCCCTTAAAGGCCCTGATGCCTCTCTTAATTTCCCAGACGCTCTCTTATCCTATCGCATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCGACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCAGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCTGCCGCCCGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCACGGATCAAGTCGCTCTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCCAATAA 573 56.72 MSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDALLSYRIPSSTSPSDIRAAAALAAAARHPDTAPAPAPAAHTRPVGGAGFSSDATAAAAAAREFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYSQ 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12227522 12228094 - CmoCh18G012390.1 Cmo18g01239 403012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01239 190 SMART rav1_2 21 83 IPR001471 GO:0003700|GO:0006355
Cmo18g01239 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE 11 189 - -
Cmo18g01239 190 MobiDBLite consensus disorder prediction 1 20 - -
Cmo18g01239 190 Gene3D AP2/ERF domain 21 78 IPR036955 GO:0003700|GO:0006355
Cmo18g01239 190 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Cmo18g01239 190 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Cmo18g01239 190 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Cmo18g01239 190 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Cmo18g01239 190 MobiDBLite consensus disorder prediction 105 125 - -
Cmo18g01239 190 MobiDBLite consensus disorder prediction 1 36 - -
Cmo18g01239 190 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Cmo18g01239 190 MobiDBLite consensus disorder prediction 166 190 - -
Cmo18g01239 190 MobiDBLite consensus disorder prediction 169 190 - -
Cmo18g01239 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 189 - -
Cmo18g01239 190 ProSiteProfiles AP2/ERF domain profile. 21 77 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01262 Cmo18g01239 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g01051 Cmo-Chr16:7356312 Cmo18g01239 Cmo-Chr18:12227522 8.40E-47 dispersed
Cmo18g01239 Cmo-Chr18:12227522 Cmo06g00454 Cmo-Chr6:2168177 1.65E-43 dispersed
Cmo15g01261 Cmo-Chr15:8654286 Cmo18g01239 Cmo-Chr18:12227522 1.20E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11563 PF00847 AP2 8.80E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01239 - - cmos:111449416 309.686