Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01257 ATGATTCATGCATGGGCGTTGACGAGGAAAAAGCTTGTTGCTGACCCGAGCTTTCTGGCTTTCCCAATTCCCTGTTCATTGCCTAACTCCTCTGAATTCTCCAATTCCATAGGGAAAATGGATGGATATAGAGAAGCTTGTCTGCTTGGGGACAGCTTTGATCCGAATGGAGTTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATCGATGGTGCTGTATCTGGGGATGATCAGGATGCTAACGACGAACGACGACGAAAAAGGAAGAAGTACCATAGGCATACCCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGTCCTCATCCAGATGATAAACAAAGGAGTGAGCTCAGTAGGAGACTTGGTTTGGAGTCGAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACCCAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCACGAAAACGATAAGCTTCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCGAACCCAACGTGCAATACATGCGGTGGACCTTCAATTCCTGTTCATCTATCGTTCGAGGAACACCAGCTTAGGATTGATAATGCCAGATTAAGGGATGAACTGCACCGGTTATATACCGTCACCAACAAGTTCTTGGGCTGGCCAGTTTTGCCCTTTGTCAATCATAGCTCTTCAGTGAGCTCTGACTCGTGCTTGGAACTTTCTGTTGGAAGAAATGGAATGGGAAATGTGAGTAACATTTCTGATCCTATTCCTATGGGGCTTAACTTGGGAAACGGACTTTTCAATGGTGGCCCTGTGATGCCTATTAGTAAGTCTCAAATGGGCATGCCAGGCAATGATATACCAATTGACAGAACAATATATGTGGATCTTGCTTTGGCTGCTATGGATGAATTGGTTAAGATGGCTCAAATTGATACCCCCCTTTGGGTCAGAAGCCGGGATAGCAGTGGCAAAGAGACGTTGAACTTTGACGAATATTCCAGGACATTTCCTTCGTCGGCTGCCATGCAACACACTAATTGGACGACAGAGGCTACCAGAGATACTACAATGGTCATCATCAACAGCATGGCACTCATCGAGACGTTGATGGATGCAAACCGATGGGCAGAAATGTTTCCTTGTTTGATTGCTAGAGCCACAACAATCGATGTGATATCAAATGGCATGGGTGGAACTAGAAATGGTTCATTACAATTGATGCATGCTGAACTTCGAGTACTTTCCCCGCTTGTTCCTGTTCGTACTCTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTGTGGGCTGTAGTTGATGTTTCCCTCGGAGAAGGCGCGGATGCAGACATGTTTTTCAGTTGCAGGAGGCTCCCTTCCGGCTGTATTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAAACTGTTGTACACCAACTTTACCGCCAGATAATTAGTTGGGGCATCGGCTTCGGTTCGCAACGGTGGCTTGCTACCCTTCAAAGACAATGTGACTGTCTGGCAATTCTTATGTCTTCTACGGAAGATCCTGCAGGAATATCACCACACGGTAGGCGAAGTATGCTGAAACTATCCCAGCGTATGGTTGATAACTTCTGTTCTGGGATTTGTACTTCAACATTGCATAAGTGGGACAAGCTTGTTGTTGGCAATATTAGTGAAGATGTAAAAATGATGGCTAGAAACAGCATCAACGATCCTGGCGAGCCACCGGGTATCGTGTTGAGCGCTGCAACTTCTGTTTGGATGCCAGTAACTCAGCAGAGATTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGCGAATGGGACATTTTATCCAATGGCAGACCAATGATAGAGATGCTTCGCATATCGAAAGGCCAGGGACTGGATAACCGTGTTTCTCTCCTGCGCGCTAACCCCATGAATGCTAATGAGAACACCATGCTTATATTGCAAGAGAGTTGGACTGATATTTCAGGCTCACTGATCGTTTACGCTCCAGTCGACGCAGCCTCCATTAACTTGGTGATGCGTGGAGGAGATTCGGCTTATGTATCGCTACTACCTTCAGGATTCGCCATTCTCCCCGATGGCCCATCCATCTATGCTTCTACTAACAACGACAAAGACGGTTCGATCATGTCAGACATTAACAGTGGCTATGCTGGTGGATGCCTTCTCACAGTTGCATTCCAAATCTTGGTGAATAACCTTCCAACAGCCAAACTCACCGTTGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAGTCGCCCTTCGAGTATCGTAA 2373 45.81 MIHAWALTRKKLVADPSFLAFPIPCSLPNSSEFSNSIGKMDGYREACLLGDSFDPNGVVRMREDEYDSRSGSDNIDGAVSGDDQDANDERRRKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMKTQIERHENAILKHENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIDNARLRDELHRLYTVTNKFLGWPVLPFVNHSSSVSSDSCLELSVGRNGMGNVSNISDPIPMGLNLGNGLFNGGPVMPISKSQMGMPGNDIPIDRTIYVDLALAAMDELVKMAQIDTPLWVRSRDSSGKETLNFDEYSRTFPSSAAMQHTNWTTEATRDTTMVIINSMALIETLMDANRWAEMFPCLIARATTIDVISNGMGGTRNGSLQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSLGEGADADMFFSCRRLPSGCIVQDMPNGFSKVTWVEHTEYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCDCLAILMSSTEDPAGISPHGRRSMLKLSQRMVDNFCSGICTSTLHKWDKLVVGNISEDVKMMARNSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNGRPMIEMLRISKGQGLDNRVSLLRANPMNANENTMLILQESWTDISGSLIVYAPVDAASINLVMRGGDSAYVSLLPSGFAILPDGPSIYASTNNDKDGSIMSDINSGYAGGCLLTVAFQILVNNLPTAKLTVESVETVNNLISCTIQKIKVALRVS 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12311482 12315772 + CmoCh18G012570.1 Cmo18g01257 403030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01257 790 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 44 788 IPR042160 -
Cmo18g01257 790 Coils Coil 145 172 - -
Cmo18g01257 790 Gene3D - 80 166 - -
Cmo18g01257 790 SMART HOX_1 93 155 IPR001356 GO:0003677
Cmo18g01257 790 Pfam Homeodomain 94 149 IPR001356 GO:0003677
Cmo18g01257 790 SMART START_1 303 525 IPR002913 GO:0008289
Cmo18g01257 790 CDD homeodomain 98 151 IPR001356 GO:0003677
Cmo18g01257 790 SUPERFAMILY Bet v1-like 295 525 - -
Cmo18g01257 790 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Cmo18g01257 790 SUPERFAMILY Bet v1-like 551 782 - -
Cmo18g01257 790 MobiDBLite consensus disorder prediction 64 101 - -
Cmo18g01257 790 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Cmo18g01257 790 CDD START_ArGLABRA2_like 303 523 - -
Cmo18g01257 790 ProSiteProfiles START domain profile. 294 528 IPR002913 GO:0008289
Cmo18g01257 790 SUPERFAMILY Homeodomain-like 78 151 IPR009057 -
Cmo18g01257 790 Pfam START domain 304 524 IPR002913 GO:0008289
Cmo18g01257 790 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 44 788 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00146 Cmo18g01257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00020 Cmo-Chr17:89213 Cmo18g01257 Cmo-Chr18:12311482 0 dispersed
Cmo18g01257 Cmo-Chr18:12311482 Cmo19g00954 Cmo-Chr19:8710347 0 dispersed
Cmo14g02074 Cmo-Chr14:15106336 Cmo18g01257 Cmo-Chr18:12311482 0 wgd
Cmo16g00146 Cmo-Chr16:664145 Cmo18g01257 Cmo-Chr18:12311482 0 wgd
Cmo18g01257 Cmo-Chr18:12311482 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11565 PF01852 START 4.00E-46 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01257 K09338 - csv:101218216 1336.24