Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01258 | ATGGGTATGGAGCTGAAACGCCTCTTTCTCATTTTCTTCTTCTTCTTCGAGCTCTGTATTTTGACCTCCAATGGCGTTTCTGACCACAATCAGATTCTTCTCGACAGAGAAAGCTTGCTTTCTTTCAAAGCATTGCTAGACACCTCAAAAACCCTTCCATGGAACTCATTGGTCCCTCACTGCTTTTGGGTCGGCGTTTCTTGCCGATTCCGTCGAGTTACAGAGCTCTCCCTTTCATCTCGTTCCCTTAAAGGCCGACTGTCTCCTTCCCTTTTCAATATCTCGAGCCTCTCTGTTCTTGACCTTTCAAACAACGACCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGACGGAAATCAGTTTTCCGGCGACTTCCCCATCGGACTCACTGAGTTGACCCAGATGGAGAATCTCAAGTTGGGGAGTAATTTGTTTACAGGGACAATCCCGCCGGAGCTTGGAAAGTTAAAGCAACTACGGACGCTTGACCTTTCCGGCAATGCCTTCGTCGGAAATGTTCCGACCCATATCGGAAATTTGACGAGAATCTTATCGTTGGACCTTGGCAACAATCTTTTATCAGGTTCACTCCCATTAACCATCTTTACTGAGCTTAAATCCTTAACTTCTTTGGACATTTCCAACAACTCGTTTTCTGGTTCAATCCCACCTGAAATTGGTAATCTACAGCATTTGACTGACCTTTACATCGGCATTAACCACTTTTCCGGCGAGTTGCCGCCTGAATTTGGTAATCTTGTGTTGCTAGAGAACTTTTTCGCTCCTTCTTGTTCTTTAACTGGTCCATTGCCCGAAGAACTATCCAAGTTGAAATCATTGAGTAAACTGGACCTTTCATACAACCCACTTGAATGTTCTATCCCAAAATCGATTGGTGAGTTACAGAACTTGACCATATTGAATCTGGTTTACACTGACATTAATGGTTCCATTCCTGCTGAACTTGGAAACTGCAAAAACTTGAAAACATTGATGCTTTCATTCAACTCTCTATCTGGGATGTTGCCACAAGAGCTTTCAGAGCTTCCCATCTTGACATTTTCTGCAGAGAAGAATCAGCTTTCTGGGCCATTGCCTTCTTGGCTTGGCAAATGGGATCGTGTTGAATCGATCTTACTGTCGAGTAATCGGTTCACCGGGGAAATCCCACCTGAGATTGGGAATTGCTCAATGCTTAATCACCTCAGTTTGAGAAATAACATGTTAACAGGTTCAATACCTAAAGAGATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGATAGTAATTTCCTTTCGGGTTCGATCGACGACACGTTCGTGCTGTGTAGAAACCTTACACAGTTGGTTTTGGTAGACAATCTGATTGTTGGTGCAATACCTGAGTACTTCTCAGACCTTCCCTTACTCGTAATCAACCTCGACTCGAATAATTTCACCGGTTTGTTACCAAGAAGTATATGGAACTCGGTGAATTTGATGGAGTTTTCTGCTGCAAATAACCAATTGGAGGGTCATCTCCCTTCAGAGATTGGTTATGCAGCTTCACTTCAGAGGCTTGTTCTTAGCAACAATAGGTTGACAGGCACAATACCAAATGAGATTGGAAATCTCACAGCCCTTTCTGTTCTAAACTTGAATTCAAATCTGCTTGAAGGAACTATTCCAACCATGCTTGGAGATTGTAAAGCTCTTACCACATTGGACCTCGGAAACAACGGTCTAAACGGGTCGATACCGGAAGGACTTGCAGAGCTTGCTGAATTACAGTGCCTTGTTCTTTCGCACAATGAGTTATCTGGAGCAATACCTTCCAAGACATCTGCTTATTTTCAACAAGTGACTATTCCTGATTTGAGCTTTGTTCAACATCATGGTGTTTTTGATTTGTCCCATAATAGATTGTCGGGTAGCATACCTGATGAACTGGGGGAGTGTGTTGTCGTGGTGGATCTTTTACTGAACAATAATCTACTTTCTGGAGAGATTCCTAAATCTCTTTCTCTCTTAACAAACCTGACAACCTTGGATTTGTCTGGCAATATGCTTTCCGGTCCTATTCCCGCAGAGCTCGGCGATGTTCTCAAGCTGCAAGGCCTGTATCTTGGGAATAATCGCCTCACCGGATCGATCCCGGTAAGCTTGAGTCGTTTGAGTAGCTTGGTGAAGTTGAACTTAACTGGTAATAGACTATCTGGTTCAGTTCCAGAAACTCTTGGTGATCTGAAAGCTTTAACTCATTTGGATCTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTTGTCTCTGTCCAACGTGTTGAATCTTGTGGGGCTTTATGTACAAGAGAACAGGCTTTCTGGACAGATTGTAGAGCTTTTCCCAAGCTCATTTACATGGAAGATTGAAGCTTTGAATTTGAGTCGTAACGAGTTCGAGGGCGTTCTTCCACGAGCATTAGGCAACCTTTCATACTTGACAACTTTGGATCTTCATGGAAATAATTTCACAGGGCCAATCCCTCCAGATCTTGGGGATCTTATGCAACTTGAGTACTTAGATGTTTCAAATAACAAGCTCTCAGGAGAGATTCCAGAGAAAATATGCAGCCTGTTCAATATGTTCTACCTGAATTTGGCGAAAAACAGTCTCGAAGGACCCATCCCGAAAAGCGGCATTTGCCAGAATCTATCCAAAAGTTCATTTGTTGGGAACAAGAATCTTTGTGGAAGAATCATGGGTTACAATTGCAAGATCAAAAGCATGGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGTGTTCTTGTCGTTTTTTCCGTGGCGTTTGCTATGCGAAAACGGATTATTCGAAGCCATAGAGATGATGATCCAGAGGACATGGAGGAAAGCAAACTAAACAGTTTGATGGATCCCAATCTCTATTTCTTAAGCAGCAGTAGATCGAAAGAGCCGTTAAGCATCAACGTGGCGATGTTCGAGCAGCCGCTTCTGAAGCTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGTAAAACAAACATCATTGGAGATGGAGGATTTGGGACAGTGTACAAGGCCACCTTGCCTGATGGGAAAATTGTTGCTGTCAAGAAGCTAAGCCAAGCAAAAACACAGGGGCACAGGGAATTCATGGCTGAAATGGAAACCATAGGCAAAGTAAAGCATCATAACCTTGTTCCATTGCTTGGCTACTGCTCTCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGCGAAACCGAACCAGTGCGCTTGAAGTTCTTAACTGGGAGACTCGGCTCAAAGTCGCTTCGGGCGCAGCGTGTGGATTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAGGCAAGTAATATACTACTGAATGAAGAGTTTGAACCAAAAGTTGGTGACTTTGGATTGGCAAGGTTGATCAGTGCTTGTGAGACTCATGTGACAACTGAGATAGCTGGAACGTTTGGTTACATTCCGCCGGAGTACGGGCAGAGCGGGAGATCGACGGCGAAAGGAGACGTTTATAGCTTCGGAGTGATTCTGCTGGAACTGGTAACTGGGAAGGAACCAACAGGACCTGAGTTTAAGGAGATTGAAGGTGGGAATCTGGTTGGTTGGGTGTTTCAGAAGATCAAGAAGGGTGAGGGGGCGGAGGTTCTGGACGTGACGGTTTTGAATGCTGATTCAAAGCATATGATGCTTCAAACTCTAAAGATTGCTTGTGTTTGTCTGTCTGAAAATCCTGCTAACAGACCTTCCATGCTTCAGGTATTCAAGTTTCTTAAAGGGATCAAATTACAGTAA | 3903 | 43.66 | MGMELKRLFLIFFFFFELCILTSNGVSDHNQILLDRESLLSFKALLDTSKTLPWNSLVPHCFWVGVSCRFRRVTELSLSSRSLKGRLSPSLFNISSLSVLDLSNNDLYGSIPPQISNLRSLKVLALDGNQFSGDFPIGLTELTQMENLKLGSNLFTGTIPPELGKLKQLRTLDLSGNAFVGNVPTHIGNLTRILSLDLGNNLLSGSLPLTIFTELKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPEFGNLVLLENFFAPSCSLTGPLPEELSKLKSLSKLDLSYNPLECSIPKSIGELQNLTILNLVYTDINGSIPAELGNCKNLKTLMLSFNSLSGMLPQELSELPILTFSAEKNQLSGPLPSWLGKWDRVESILLSSNRFTGEIPPEIGNCSMLNHLSLRNNMLTGSIPKEICNAASLMEIDLDSNFLSGSIDDTFVLCRNLTQLVLVDNLIVGAIPEYFSDLPLLVINLDSNNFTGLLPRSIWNSVNLMEFSAANNQLEGHLPSEIGYAASLQRLVLSNNRLTGTIPNEIGNLTALSVLNLNSNLLEGTIPTMLGDCKALTTLDLGNNGLNGSIPEGLAELAELQCLVLSHNELSGAIPSKTSAYFQQVTIPDLSFVQHHGVFDLSHNRLSGSIPDELGECVVVVDLLLNNNLLSGEIPKSLSLLTNLTTLDLSGNMLSGPIPAELGDVLKLQGLYLGNNRLTGSIPVSLSRLSSLVKLNLTGNRLSGSVPETLGDLKALTHLDLSSNELDGDLPLSLSNVLNLVGLYVQENRLSGQIVELFPSSFTWKIEALNLSRNEFEGVLPRALGNLSYLTTLDLHGNNFTGPIPPDLGDLMQLEYLDVSNNKLSGEIPEKICSLFNMFYLNLAKNSLEGPIPKSGICQNLSKSSFVGNKNLCGRIMGYNCKIKSMERSAVLNAWSVAGIIIVSVLVVFSVAFAMRKRIIRSHRDDDPEDMEESKLNSLMDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSQAKTQGHREFMAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTSALEVLNWETRLKVASGAACGLAFLHHGFIPHIIHRDVKASNILLNEEFEPKVGDFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTAKGDVYSFGVILLELVTGKEPTGPEFKEIEGGNLVGWVFQKIKKGEGAEVLDVTVLNADSKHMMLQTLKIACVCLSENPANRPSMLQVFKFLKGIKLQ | 1300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 12320265 | 12324167 | + | CmoCh18G012580.1 | Cmo18g01258 | 403031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01258 | 1300 | ProSiteProfiles | Protein kinase domain profile. | 1022 | 1300 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g01258 | 1300 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 810 | 895 | - | - | |
Cmo18g01258 | 1300 | Pfam | Leucine rich repeat N-terminal domain | 35 | 68 | IPR013210 | - | |
Cmo18g01258 | 1300 | Pfam | Leucine rich repeat | 552 | 610 | IPR001611 | GO:0005515 | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 753 | 777 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 597 | 621 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 287 | 311 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 190 | 214 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 851 | 875 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 94 | 118 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 729 | 752 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 549 | 573 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 142 | 166 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 335 | 359 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 681 | 705 | IPR003591 | - | |
Cmo18g01258 | 1300 | SMART | LRR_typ_2 | 215 | 239 | IPR003591 | - | |
Cmo18g01258 | 1300 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 133 | 343 | - | - | |
Cmo18g01258 | 1300 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 73 | 136 | - | - | |
Cmo18g01258 | 1300 | SMART | serkin_6 | 1022 | 1294 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g01258 | 1300 | Gene3D | Phosphorylase Kinase; domain 1 | 985 | 1097 | - | - | |
Cmo18g01258 | 1300 | PRINTS | Leucine-rich repeat signature | 681 | 694 | - | - | |
Cmo18g01258 | 1300 | PRINTS | Leucine-rich repeat signature | 218 | 231 | - | - | |
Cmo18g01258 | 1300 | Gene3D | Ribonuclease Inhibitor | 624 | 924 | IPR032675 | - | |
Cmo18g01258 | 1300 | Gene3D | Ribonuclease Inhibitor | 213 | 363 | IPR032675 | - | |
Cmo18g01258 | 1300 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 952 | 1298 | - | - | |
Cmo18g01258 | 1300 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 451 | 786 | - | - | |
Cmo18g01258 | 1300 | Pfam | Leucine Rich Repeat | 756 | 776 | IPR001611 | GO:0005515 | |
Cmo18g01258 | 1300 | Pfam | Leucine Rich Repeat | 290 | 311 | IPR001611 | GO:0005515 | |
Cmo18g01258 | 1300 | Pfam | Leucine Rich Repeat | 217 | 239 | IPR001611 | GO:0005515 | |
Cmo18g01258 | 1300 | Pfam | Leucine Rich Repeat | 527 | 549 | IPR001611 | GO:0005515 | |
Cmo18g01258 | 1300 | SUPERFAMILY | L domain-like | 368 | 631 | - | - | |
Cmo18g01258 | 1300 | SUPERFAMILY | L domain-like | 639 | 914 | - | - | |
Cmo18g01258 | 1300 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 952 | 1298 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 166 | 192 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 573 | 596 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 94 | 120 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 681 | 696 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 753 | 779 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 705 | 726 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 215 | 241 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 287 | 313 | - | - | |
Cmo18g01258 | 1300 | SMART | LRR_sd22_2 | 851 | 877 | - | - | |
Cmo18g01258 | 1300 | Gene3D | Ribonuclease Inhibitor | 511 | 623 | IPR032675 | - | |
Cmo18g01258 | 1300 | SUPERFAMILY | RNI-like | 68 | 363 | - | - | |
Cmo18g01258 | 1300 | Pfam | Protein tyrosine and serine/threonine kinase | 1026 | 1293 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo18g01258 | 1300 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1098 | 1299 | - | - | |
Cmo18g01258 | 1300 | Gene3D | Ribonuclease Inhibitor | 364 | 509 | IPR032675 | - | |
Cmo18g01258 | 1300 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 | 371 | 451 | - | - | |
Cmo18g01258 | 1300 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1028 | 1051 | IPR017441 | GO:0005524 | |
Cmo18g01258 | 1300 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 133 | 343 | - | - | |
Cmo18g01258 | 1300 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 73 | 136 | - | - | |
Cmo18g01258 | 1300 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 451 | 786 | - | - | |
Cmo18g01258 | 1300 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 371 | 451 | - | - | |
Cmo18g01258 | 1300 | SUPERFAMILY | Protein kinase-like (PK-like) | 1003 | 1294 | IPR011009 | - | |
Cmo18g01258 | 1300 | Gene3D | Ribonuclease Inhibitor | 144 | 212 | IPR032675 | - | |
Cmo18g01258 | 1300 | Gene3D | Ribonuclease Inhibitor | 34 | 143 | IPR032675 | - | |
Cmo18g01258 | 1300 | CDD | STKc_IRAK | 1028 | 1297 | - | - | |
Cmo18g01258 | 1300 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 810 | 895 | - | - | |
Cmo18g01258 | 1300 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1144 | 1156 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02871 | Cmo-Chr4:20430974 | Cmo18g01258 | Cmo-Chr18:12320265 | 6.50E-06 | dispersed | |
Cmo11g00461 | Cmo-Chr11:2251840 | Cmo18g01258 | Cmo-Chr18:12320265 | 1.47E-10 | dispersed | |
Cmo13g00624 | Cmo-Chr13:6752417 | Cmo18g01258 | Cmo-Chr18:12320265 | 4.30E-07 | dispersed | |
Cmo15g00311 | Cmo-Chr15:1452082 | Cmo18g01258 | Cmo-Chr18:12320265 | 1.50E-06 | dispersed | |
Cmo18g00400 | Cmo-Chr18:2601678 | Cmo18g01258 | Cmo-Chr18:12320265 | 8.07E-07 | dispersed | |
Cmo18g01258 | Cmo-Chr18:12320265 | Cmo18g00242 | Cmo-Chr18:1596967 | 4.09E-38 | dispersed | |
Cmo04g00003 | Cmo-Chr4:10055 | Cmo18g01258 | Cmo-Chr18:12320265 | 6.31E-34 | transposed | |
Cmo08g00566 | Cmo-Chr8:3469115 | Cmo18g01258 | Cmo-Chr18:12320265 | 9.89E-08 | transposed | |
Cmo15g00590 | Cmo-Chr15:2844691 | Cmo18g01258 | Cmo-Chr18:12320265 | 1.16E-73 | transposed | |
Cmo16g00436 | Cmo-Chr16:2077034 | Cmo18g01258 | Cmo-Chr18:12320265 | 2.93E-08 | transposed | |
Cmo16g00143 | Cmo-Chr16:650920 | Cmo18g01258 | Cmo-Chr18:12320265 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75086 | PF07714 | PK_Tyr_Ser-Thr | 4.00E-45 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01258 | - | - | csv:101215443 | 2144.78 |