Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01258 ATGGGTATGGAGCTGAAACGCCTCTTTCTCATTTTCTTCTTCTTCTTCGAGCTCTGTATTTTGACCTCCAATGGCGTTTCTGACCACAATCAGATTCTTCTCGACAGAGAAAGCTTGCTTTCTTTCAAAGCATTGCTAGACACCTCAAAAACCCTTCCATGGAACTCATTGGTCCCTCACTGCTTTTGGGTCGGCGTTTCTTGCCGATTCCGTCGAGTTACAGAGCTCTCCCTTTCATCTCGTTCCCTTAAAGGCCGACTGTCTCCTTCCCTTTTCAATATCTCGAGCCTCTCTGTTCTTGACCTTTCAAACAACGACCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGACGGAAATCAGTTTTCCGGCGACTTCCCCATCGGACTCACTGAGTTGACCCAGATGGAGAATCTCAAGTTGGGGAGTAATTTGTTTACAGGGACAATCCCGCCGGAGCTTGGAAAGTTAAAGCAACTACGGACGCTTGACCTTTCCGGCAATGCCTTCGTCGGAAATGTTCCGACCCATATCGGAAATTTGACGAGAATCTTATCGTTGGACCTTGGCAACAATCTTTTATCAGGTTCACTCCCATTAACCATCTTTACTGAGCTTAAATCCTTAACTTCTTTGGACATTTCCAACAACTCGTTTTCTGGTTCAATCCCACCTGAAATTGGTAATCTACAGCATTTGACTGACCTTTACATCGGCATTAACCACTTTTCCGGCGAGTTGCCGCCTGAATTTGGTAATCTTGTGTTGCTAGAGAACTTTTTCGCTCCTTCTTGTTCTTTAACTGGTCCATTGCCCGAAGAACTATCCAAGTTGAAATCATTGAGTAAACTGGACCTTTCATACAACCCACTTGAATGTTCTATCCCAAAATCGATTGGTGAGTTACAGAACTTGACCATATTGAATCTGGTTTACACTGACATTAATGGTTCCATTCCTGCTGAACTTGGAAACTGCAAAAACTTGAAAACATTGATGCTTTCATTCAACTCTCTATCTGGGATGTTGCCACAAGAGCTTTCAGAGCTTCCCATCTTGACATTTTCTGCAGAGAAGAATCAGCTTTCTGGGCCATTGCCTTCTTGGCTTGGCAAATGGGATCGTGTTGAATCGATCTTACTGTCGAGTAATCGGTTCACCGGGGAAATCCCACCTGAGATTGGGAATTGCTCAATGCTTAATCACCTCAGTTTGAGAAATAACATGTTAACAGGTTCAATACCTAAAGAGATTTGTAATGCTGCATCCTTGATGGAGATTGATCTTGATAGTAATTTCCTTTCGGGTTCGATCGACGACACGTTCGTGCTGTGTAGAAACCTTACACAGTTGGTTTTGGTAGACAATCTGATTGTTGGTGCAATACCTGAGTACTTCTCAGACCTTCCCTTACTCGTAATCAACCTCGACTCGAATAATTTCACCGGTTTGTTACCAAGAAGTATATGGAACTCGGTGAATTTGATGGAGTTTTCTGCTGCAAATAACCAATTGGAGGGTCATCTCCCTTCAGAGATTGGTTATGCAGCTTCACTTCAGAGGCTTGTTCTTAGCAACAATAGGTTGACAGGCACAATACCAAATGAGATTGGAAATCTCACAGCCCTTTCTGTTCTAAACTTGAATTCAAATCTGCTTGAAGGAACTATTCCAACCATGCTTGGAGATTGTAAAGCTCTTACCACATTGGACCTCGGAAACAACGGTCTAAACGGGTCGATACCGGAAGGACTTGCAGAGCTTGCTGAATTACAGTGCCTTGTTCTTTCGCACAATGAGTTATCTGGAGCAATACCTTCCAAGACATCTGCTTATTTTCAACAAGTGACTATTCCTGATTTGAGCTTTGTTCAACATCATGGTGTTTTTGATTTGTCCCATAATAGATTGTCGGGTAGCATACCTGATGAACTGGGGGAGTGTGTTGTCGTGGTGGATCTTTTACTGAACAATAATCTACTTTCTGGAGAGATTCCTAAATCTCTTTCTCTCTTAACAAACCTGACAACCTTGGATTTGTCTGGCAATATGCTTTCCGGTCCTATTCCCGCAGAGCTCGGCGATGTTCTCAAGCTGCAAGGCCTGTATCTTGGGAATAATCGCCTCACCGGATCGATCCCGGTAAGCTTGAGTCGTTTGAGTAGCTTGGTGAAGTTGAACTTAACTGGTAATAGACTATCTGGTTCAGTTCCAGAAACTCTTGGTGATCTGAAAGCTTTAACTCATTTGGATCTAAGTTCTAATGAGTTGGATGGTGATCTTCCTTTGTCTCTGTCCAACGTGTTGAATCTTGTGGGGCTTTATGTACAAGAGAACAGGCTTTCTGGACAGATTGTAGAGCTTTTCCCAAGCTCATTTACATGGAAGATTGAAGCTTTGAATTTGAGTCGTAACGAGTTCGAGGGCGTTCTTCCACGAGCATTAGGCAACCTTTCATACTTGACAACTTTGGATCTTCATGGAAATAATTTCACAGGGCCAATCCCTCCAGATCTTGGGGATCTTATGCAACTTGAGTACTTAGATGTTTCAAATAACAAGCTCTCAGGAGAGATTCCAGAGAAAATATGCAGCCTGTTCAATATGTTCTACCTGAATTTGGCGAAAAACAGTCTCGAAGGACCCATCCCGAAAAGCGGCATTTGCCAGAATCTATCCAAAAGTTCATTTGTTGGGAACAAGAATCTTTGTGGAAGAATCATGGGTTACAATTGCAAGATCAAAAGCATGGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGTGTTCTTGTCGTTTTTTCCGTGGCGTTTGCTATGCGAAAACGGATTATTCGAAGCCATAGAGATGATGATCCAGAGGACATGGAGGAAAGCAAACTAAACAGTTTGATGGATCCCAATCTCTATTTCTTAAGCAGCAGTAGATCGAAAGAGCCGTTAAGCATCAACGTGGCGATGTTCGAGCAGCCGCTTCTGAAGCTAACTTTGGTTGATATCCTTGAAGCAACCAATAACTTCTGTAAAACAAACATCATTGGAGATGGAGGATTTGGGACAGTGTACAAGGCCACCTTGCCTGATGGGAAAATTGTTGCTGTCAAGAAGCTAAGCCAAGCAAAAACACAGGGGCACAGGGAATTCATGGCTGAAATGGAAACCATAGGCAAAGTAAAGCATCATAACCTTGTTCCATTGCTTGGCTACTGCTCTCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGCGAAACCGAACCAGTGCGCTTGAAGTTCTTAACTGGGAGACTCGGCTCAAAGTCGCTTCGGGCGCAGCGTGTGGATTGGCATTTCTTCACCATGGATTCATCCCCCACATCATTCATAGGGATGTTAAGGCAAGTAATATACTACTGAATGAAGAGTTTGAACCAAAAGTTGGTGACTTTGGATTGGCAAGGTTGATCAGTGCTTGTGAGACTCATGTGACAACTGAGATAGCTGGAACGTTTGGTTACATTCCGCCGGAGTACGGGCAGAGCGGGAGATCGACGGCGAAAGGAGACGTTTATAGCTTCGGAGTGATTCTGCTGGAACTGGTAACTGGGAAGGAACCAACAGGACCTGAGTTTAAGGAGATTGAAGGTGGGAATCTGGTTGGTTGGGTGTTTCAGAAGATCAAGAAGGGTGAGGGGGCGGAGGTTCTGGACGTGACGGTTTTGAATGCTGATTCAAAGCATATGATGCTTCAAACTCTAAAGATTGCTTGTGTTTGTCTGTCTGAAAATCCTGCTAACAGACCTTCCATGCTTCAGGTATTCAAGTTTCTTAAAGGGATCAAATTACAGTAA 3903 43.66 MGMELKRLFLIFFFFFELCILTSNGVSDHNQILLDRESLLSFKALLDTSKTLPWNSLVPHCFWVGVSCRFRRVTELSLSSRSLKGRLSPSLFNISSLSVLDLSNNDLYGSIPPQISNLRSLKVLALDGNQFSGDFPIGLTELTQMENLKLGSNLFTGTIPPELGKLKQLRTLDLSGNAFVGNVPTHIGNLTRILSLDLGNNLLSGSLPLTIFTELKSLTSLDISNNSFSGSIPPEIGNLQHLTDLYIGINHFSGELPPEFGNLVLLENFFAPSCSLTGPLPEELSKLKSLSKLDLSYNPLECSIPKSIGELQNLTILNLVYTDINGSIPAELGNCKNLKTLMLSFNSLSGMLPQELSELPILTFSAEKNQLSGPLPSWLGKWDRVESILLSSNRFTGEIPPEIGNCSMLNHLSLRNNMLTGSIPKEICNAASLMEIDLDSNFLSGSIDDTFVLCRNLTQLVLVDNLIVGAIPEYFSDLPLLVINLDSNNFTGLLPRSIWNSVNLMEFSAANNQLEGHLPSEIGYAASLQRLVLSNNRLTGTIPNEIGNLTALSVLNLNSNLLEGTIPTMLGDCKALTTLDLGNNGLNGSIPEGLAELAELQCLVLSHNELSGAIPSKTSAYFQQVTIPDLSFVQHHGVFDLSHNRLSGSIPDELGECVVVVDLLLNNNLLSGEIPKSLSLLTNLTTLDLSGNMLSGPIPAELGDVLKLQGLYLGNNRLTGSIPVSLSRLSSLVKLNLTGNRLSGSVPETLGDLKALTHLDLSSNELDGDLPLSLSNVLNLVGLYVQENRLSGQIVELFPSSFTWKIEALNLSRNEFEGVLPRALGNLSYLTTLDLHGNNFTGPIPPDLGDLMQLEYLDVSNNKLSGEIPEKICSLFNMFYLNLAKNSLEGPIPKSGICQNLSKSSFVGNKNLCGRIMGYNCKIKSMERSAVLNAWSVAGIIIVSVLVVFSVAFAMRKRIIRSHRDDDPEDMEESKLNSLMDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKIVAVKKLSQAKTQGHREFMAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTSALEVLNWETRLKVASGAACGLAFLHHGFIPHIIHRDVKASNILLNEEFEPKVGDFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTAKGDVYSFGVILLELVTGKEPTGPEFKEIEGGNLVGWVFQKIKKGEGAEVLDVTVLNADSKHMMLQTLKIACVCLSENPANRPSMLQVFKFLKGIKLQ 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12320265 12324167 + CmoCh18G012580.1 Cmo18g01258 403031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01258 1300 ProSiteProfiles Protein kinase domain profile. 1022 1300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01258 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 810 895 - -
Cmo18g01258 1300 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Cmo18g01258 1300 Pfam Leucine rich repeat 552 610 IPR001611 GO:0005515
Cmo18g01258 1300 SMART LRR_typ_2 753 777 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 597 621 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 287 311 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 190 214 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 851 875 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 94 118 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 729 752 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 549 573 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 142 166 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 335 359 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 681 705 IPR003591 -
Cmo18g01258 1300 SMART LRR_typ_2 215 239 IPR003591 -
Cmo18g01258 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 133 343 - -
Cmo18g01258 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 136 - -
Cmo18g01258 1300 SMART serkin_6 1022 1294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01258 1300 Gene3D Phosphorylase Kinase; domain 1 985 1097 - -
Cmo18g01258 1300 PRINTS Leucine-rich repeat signature 681 694 - -
Cmo18g01258 1300 PRINTS Leucine-rich repeat signature 218 231 - -
Cmo18g01258 1300 Gene3D Ribonuclease Inhibitor 624 924 IPR032675 -
Cmo18g01258 1300 Gene3D Ribonuclease Inhibitor 213 363 IPR032675 -
Cmo18g01258 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 952 1298 - -
Cmo18g01258 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 451 786 - -
Cmo18g01258 1300 Pfam Leucine Rich Repeat 756 776 IPR001611 GO:0005515
Cmo18g01258 1300 Pfam Leucine Rich Repeat 290 311 IPR001611 GO:0005515
Cmo18g01258 1300 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Cmo18g01258 1300 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Cmo18g01258 1300 SUPERFAMILY L domain-like 368 631 - -
Cmo18g01258 1300 SUPERFAMILY L domain-like 639 914 - -
Cmo18g01258 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 952 1298 - -
Cmo18g01258 1300 SMART LRR_sd22_2 166 192 - -
Cmo18g01258 1300 SMART LRR_sd22_2 573 596 - -
Cmo18g01258 1300 SMART LRR_sd22_2 94 120 - -
Cmo18g01258 1300 SMART LRR_sd22_2 681 696 - -
Cmo18g01258 1300 SMART LRR_sd22_2 753 779 - -
Cmo18g01258 1300 SMART LRR_sd22_2 705 726 - -
Cmo18g01258 1300 SMART LRR_sd22_2 215 241 - -
Cmo18g01258 1300 SMART LRR_sd22_2 287 313 - -
Cmo18g01258 1300 SMART LRR_sd22_2 851 877 - -
Cmo18g01258 1300 Gene3D Ribonuclease Inhibitor 511 623 IPR032675 -
Cmo18g01258 1300 SUPERFAMILY RNI-like 68 363 - -
Cmo18g01258 1300 Pfam Protein tyrosine and serine/threonine kinase 1026 1293 IPR001245 GO:0004672|GO:0006468
Cmo18g01258 1300 Gene3D Transferase(Phosphotransferase) domain 1 1098 1299 - -
Cmo18g01258 1300 Gene3D Ribonuclease Inhibitor 364 509 IPR032675 -
Cmo18g01258 1300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 371 451 - -
Cmo18g01258 1300 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524
Cmo18g01258 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 133 343 - -
Cmo18g01258 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 136 - -
Cmo18g01258 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 451 786 - -
Cmo18g01258 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 371 451 - -
Cmo18g01258 1300 SUPERFAMILY Protein kinase-like (PK-like) 1003 1294 IPR011009 -
Cmo18g01258 1300 Gene3D Ribonuclease Inhibitor 144 212 IPR032675 -
Cmo18g01258 1300 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Cmo18g01258 1300 CDD STKc_IRAK 1028 1297 - -
Cmo18g01258 1300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 810 895 - -
Cmo18g01258 1300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1144 1156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02871 Cmo-Chr4:20430974 Cmo18g01258 Cmo-Chr18:12320265 6.50E-06 dispersed
Cmo11g00461 Cmo-Chr11:2251840 Cmo18g01258 Cmo-Chr18:12320265 1.47E-10 dispersed
Cmo13g00624 Cmo-Chr13:6752417 Cmo18g01258 Cmo-Chr18:12320265 4.30E-07 dispersed
Cmo15g00311 Cmo-Chr15:1452082 Cmo18g01258 Cmo-Chr18:12320265 1.50E-06 dispersed
Cmo18g00400 Cmo-Chr18:2601678 Cmo18g01258 Cmo-Chr18:12320265 8.07E-07 dispersed
Cmo18g01258 Cmo-Chr18:12320265 Cmo18g00242 Cmo-Chr18:1596967 4.09E-38 dispersed
Cmo04g00003 Cmo-Chr4:10055 Cmo18g01258 Cmo-Chr18:12320265 6.31E-34 transposed
Cmo08g00566 Cmo-Chr8:3469115 Cmo18g01258 Cmo-Chr18:12320265 9.89E-08 transposed
Cmo15g00590 Cmo-Chr15:2844691 Cmo18g01258 Cmo-Chr18:12320265 1.16E-73 transposed
Cmo16g00436 Cmo-Chr16:2077034 Cmo18g01258 Cmo-Chr18:12320265 2.93E-08 transposed
Cmo16g00143 Cmo-Chr16:650920 Cmo18g01258 Cmo-Chr18:12320265 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75086 PF07714 PK_Tyr_Ser-Thr 4.00E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01258 - - csv:101215443 2144.78