Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01259 ATGACAATATCCTATGAATCATTTTGTATAAACGGATGCTGGTCGAGGGATCAAAGTTTAGATGGGTTTTTTCTGTCATGGTGCCTAATTTTCTTTGACTTCTCAGTGGTCTCTTCTTCAATCTCTACCAGTTCAGGGTTTGGAACTTGCCTACGATCTTTCCGGGATCTGATTTTCTTGATTCTTGTGCCTCCTCTCATGGAGGAGCCGACCGCCAAATCGACGTCTGCCGGCGCCGATTCACCGAGATCTGTGCCCACTCCTTTCTTGTCCAAAACGTATCAGCTCGTTGATGACCAGACGGTCGACCATGTCATTTCGTGGAACGACGATGGCTCTACCTTCATCGTTTGGAACACCTTGGCTTTTGCTAGAGATTTGCTCCCCAAGCATTTCAAGCATAATAACTTCACTAGCTTCCTCCGCCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGACCGGTGGGAGTTTGCGAACGAGTGCTTTCGTAAGGGCAAGAAACAGCTTCTATGTGAGATTCAGCGTCGGAAATTGACCACTCCGGTGCTGACCACTGCTTCTAACTCGGTTGTGTTGACAGCCGTTGGTGCTTCGGCGATTCCGTCTGCCCATCTATTGACGGGGAGTTCTTCCGGTGAAGAACAAGTGATTTCGTCGGATGTAACTCCGACGAAAGATCTTGTGGAGTTGATTGATGAGAACGATAAGCTGAAAAAAGAGAAAGTTCGGCTGACGGAACAATTAACTGAGGTGAAATCCCTGTGCAACAACATCTTCTCCTTGATGTCGAGCTTCGTCGAAAACCAATTGAAGAGCAGTTGCAAAGTTAGAGAGAGCGTTTTAGCGTCGGCAAAATCGCTGGATCTTTTCCCGTTGAAGCGGCGTTCCGAAGAAGACGAAGCGGCAGAGGCCATGGAAGCGGAGACGTATCAGATCGGAGCAAAGCGGCCTAGAGAATACAGGGAGGGGCCGGAAGCGGCGGAGGATGATACTACTCTGCGACTTCAACCACCGGAGAGACCGAAAGTGAAATCAGACCGGATAATTTGA 1056 48.39 MTISYESFCINGCWSRDQSLDGFFLSWCLIFFDFSVVSSSISTSSGFGTCLRSFRDLIFLILVPPLMEEPTAKSTSAGADSPRSVPTPFLSKTYQLVDDQTVDHVISWNDDGSTFIVWNTLAFARDLLPKHFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLTTPVLTTASNSVVLTAVGASAIPSAHLLTGSSSGEEQVISSDVTPTKDLVELIDENDKLKKEKVRLTEQLTEVKSLCNNIFSLMSSFVENQLKSSCKVRESVLASAKSLDLFPLKRRSEEDEAAEAMEAETYQIGAKRPREYREGPEAAEDDTTLRLQPPERPKVKSDRII 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12324683 12328013 - CmoCh18G012590.1 Cmo18g01259 403032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01259 351 Pfam HSF-type DNA-binding 89 178 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo18g01259 351 SUPERFAMILY Winged helix DNA-binding domain 86 178 IPR036390 -
Cmo18g01259 351 MobiDBLite consensus disorder prediction 300 351 - -
Cmo18g01259 351 Gene3D - 82 179 IPR036388 -
Cmo18g01259 351 Coils Coil 229 256 - -
Cmo18g01259 351 ProSitePatterns HSF-type DNA-binding domain signature. 128 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo18g01259 351 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 70 317 - -
Cmo18g01259 351 SMART hsfneu3 85 178 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo18g01259 351 PRINTS Heat shock factor (HSF) domain signature 89 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo18g01259 351 PRINTS Heat shock factor (HSF) domain signature 127 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo18g01259 351 PRINTS Heat shock factor (HSF) domain signature 140 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmo18g01259 351 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 70 317 IPR027725 -
Cmo18g01259 351 MobiDBLite consensus disorder prediction 314 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01259 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101217977 428.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01268 Cmo18g01259 CCT
Cmo16g00141 Cmo18g01259 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01513 Cmo-Chr2:8829467 Cmo18g01259 Cmo-Chr18:12324683 4.11E-77 dispersed
Cmo06g00923 Cmo-Chr6:6678383 Cmo18g01259 Cmo-Chr18:12324683 7.92E-47 transposed
Cmo16g00142 Cmo-Chr16:650270 Cmo18g01259 Cmo-Chr18:12324683 1.29E-25 transposed
Cmo15g01268 Cmo-Chr15:8690633 Cmo18g01259 Cmo-Chr18:12324683 5.15E-79 wgd
Cmo16g00141 Cmo-Chr16:644769 Cmo18g01259 Cmo-Chr18:12324683 5.25E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11566 PF00447 HSF_DNA-bind 2.60E-31 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01259 Cmo_Chr18 FPKM 0.939173 0.785471 6.163699 10.904412 2.541499 2.262794 1.725604 0.410113 0.679711 0.434729