Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01262 ATGGCTTCCCAATCGCCGCCTTCTCTCGCCTCCCGCATATGCTCCGAAATAGCTTCCGTCTTCTCTAAGCCCACGCGCCAACACTCGCCGCCGCTGGAACTCCTGGTGTCCGAGCTCTCCGCAGCTGCGGCCCGAAAGGCCAGGGTTTTCCTCTATGGCGTCGGCCGTGAGGGTTTAATGCTCAAAGCCCTCTGTATGCGCCTCGCTCATCTCGGCCTCTCTTCGCACCAGGTCTTTGATATGAACGCGCCGCCAATCGCCGCTCATGACCTACTCATTGCGTCGGCTGGCCCCGGCGGGTTTTCGACCGTCGATGCGATTTGTTCCGTGGCTAGATCCAACGGCGGTAGGGTTTTGCTGCTGACGGCCCAACCGGAGACCGGCTCGTCCGTGAAGCACGCTGATGTGATTTGCTACGTTCCGGCGCAGACCATGGCTGACGACGAGGAATCAATGACGGAGACGGCGGTGAAATGTCGGCCTCTGCTTCCGATGGGGAGTTTGTATGAAGGGGCTCTGTTTGTTTTGTTTGAGATGGTGGTGTATCAGTTGGCTGAGGCGTTGGGAGAGAGCCCCGAGGCCGTCCGATCACGCCACACCAATCTCGAATGA 612 59.31 MASQSPPSLASRICSEIASVFSKPTRQHSPPLELLVSELSAAAARKARVFLYGVGREGLMLKALCMRLAHLGLSSHQVFDMNAPPIAAHDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSVKHADVICYVPAQTMADDEESMTETAVKCRPLLPMGSLYEGALFVLFEMVVYQLAEALGESPEAVRSRHTNLE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12334128 12334739 - CmoCh18G012620.1 Cmo18g01262 403035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01262 203 CDD SIS_PHI 10 200 IPR017552 GO:0016853
Cmo18g01262 203 Gene3D - 11 203 - -
Cmo18g01262 203 SUPERFAMILY SIS domain 35 202 IPR046348 GO:0097367|GO:1901135
Cmo18g01262 203 PANTHER 3-HEXULOSE-6-PHOSPHATE ISOMERASE 5 203 IPR017552 GO:0016853
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01262 - - - mcha:111011614 337.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00138 Cmo18g01262 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00138 Cmo-Chr16:640766 Cmo18g01262 Cmo-Chr18:12334128 2.42E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g647 . Blo15g00161 . . . Bpe07g00945 . . Cmo16g00138 Cmo18g01262 . . . . Sed13g0158 . Cpe14g00114 Bhi01g01338 Tan01g0267 Cmetu06g0672 . Hepe07g0170 Mch10g0167 . . . . . . . . . . Cone14ag0097 Cone15ag0103 Lsi05g01242 . . Cme06g00984 . . Bda06g00676 . . . . . . . . . Cma18g01239 . Car18g01143 Cpe09g00098 . . . . . . . . Cla05g00867 Cam05g0954 Cec05g0959 Cco05g0959 Clacu05g0941 Cmu05g0899 Cre05g0983 . Csa03g01698 Chy06g00934 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011202 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 0 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01262 Cmo_Chr18 FPKM 64.213928 62.993046 44.501854 43.461246 71.600365 76.116951 71.67981 81.436028 85.79924 83.196503