Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01271 ATGGTGAGCCGGAGGCAAAAGCTTGCCCGGAAAAAGTACAGAGAAGAACACCCAGAATTGTTCCCGAAAGCAGAACCAACGCCACCAAAAGATCCGGAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAGTGAATTCAAGCGCAAAAAGGGAGAATCGGATTCAAGGAACGACCCGATTAAACCACACAAAAAGGGATTTAAGAAACACCCTCTCAGAGTTCCTGGGATGAAGCCTGGTGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATCGCTAAGTTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTGACACATTTAGCTAAGGACTGTCCAAAAAAAGGCACACAAGTTTTTGCTGGGCCTGGTGCATCTGCATCTGGATATGTGGAAATGTCGAGACGACCAGAAACGAAGCTCGTCAGTGGTGACGACCTCGAGGATGACTTCATGGTCGAGGAAGATAATTTACAGATCAAAGATGCGAAACTCGGAAAGAAAAAGGGTCCCAAAGTTGCGAACGCGGCGTCTGGAATGGCTGTGAGAGATGAGTGCAAGCTCAAGTTTTTGGAGTTAAAAACAAAGAGGAACTATCGTTTCATTATATTCAAGATCGAAAATCAAGAAGTGGTTGTGGAGAAACTTGGCAGCCCTACAGAAACCTACGACGATTTCACTGCTGCTATTCCTCCTAACGAGTGTCGTTATGCTGTCTTTGATTTTGACTTCACCACCGACGAGAACTGCCAGAAAAGCAAGATCTTCTTCATAGCATGGTCACCCGACACATCGATCGTGCGAAATAAGATGGTGTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGAAGCGATGCCGGATCATATGGCGGCGGCAGAGTGCAGGGGCTTGTCTCTGCAGGGCTCTTCACCAACGATTCTGTCATGAATTCTTGAGTGAGCCCTTGAGCTGGACAAGCCATGGCCTCGGAACAAAGCTCGATCGCGTCGGGCGCTCCTCTTGGATGAAACTGGCTGCTGCCTTGCCAATGGCCTGCGCCTGA 1089 47.84 MVSRRQKLARKKYREEHPELFPKAEPTPPKDPEKKKEKKKKKSEFKRKKGESDSRNDPIKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKFCPEKAQWEKNKGGCCKTCGEVTHLAKDCPKKGTQVFAGPGASASGYVEMSRRPETKLVSGDDLEDDFMVEEDNLQIKDAKLGKKKGPKVANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPTETYDDFTAAIPPNECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSIVRNKMVYASSKDRFKRELDGIQKRCRIIWRRQSAGACLCRALHQRFCHEFLSEPLSWTSHGLGTKLDRVGRSSWMKLAAALPMACA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12357550 12362403 - CmoCh18G012710.1 Cmo18g01271 403044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01271 362 SUPERFAMILY Actin depolymerizing proteins 183 300 - -
Cmo18g01271 362 MobiDBLite consensus disorder prediction 12 38 - -
Cmo18g01271 362 ProSiteProfiles Zinc finger CCHC-type profile. 109 124 IPR001878 GO:0003676|GO:0008270
Cmo18g01271 362 SUPERFAMILY Retrovirus zinc finger-like domains 75 126 IPR036875 GO:0003676|GO:0008270
Cmo18g01271 362 Pfam Cofilin/tropomyosin-type actin-binding protein 196 300 IPR002108 GO:0003779
Cmo18g01271 362 SMART adf_2 194 319 IPR002108 GO:0003779
Cmo18g01271 362 CDD ADF_cofilin_like 188 299 IPR017904 GO:0015629|GO:0030042
Cmo18g01271 362 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 181 298 - -
Cmo18g01271 362 ProSiteProfiles ADF-H domain profile. 187 319 IPR002108 GO:0003779
Cmo18g01271 362 MobiDBLite consensus disorder prediction 1 73 - -
Cmo18g01271 362 Gene3D Severin 181 306 IPR029006 -
Cmo18g01271 362 PANTHER COFILIN-RELATED 181 298 IPR017904 GO:0015629|GO:0030042
Cmo18g01271 362 Gene3D - 76 135 - -
Cmo18g01271 362 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Cmo18g01271 362 SMART c2hcfinal6 108 124 IPR001878 GO:0003676|GO:0008270
Cmo18g01271 362 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01271 - - - cmo:103484078 344.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01271 Cmo-Chr18:12357550 Cmo03g00452 Cmo-Chr3:5058216 1.22E-61 dispersed
Cmo14g02092 Cmo-Chr14:15187052 Cmo18g01271 Cmo-Chr18:12357550 1.60E-62 wgd
Cmo15g01156 Cmo-Chr15:8081976 Cmo18g01271 Cmo-Chr18:12357550 6.58E-67 wgd
Cmo16g00131 Cmo-Chr16:612380 Cmo18g01271 Cmo-Chr18:12357550 5.65E-41 wgd
Cmo18g01271 Cmo-Chr18:12357550 Cmo02g01086 Cmo-Chr2:6595091 2.46E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01271 Cmo_Chr18 FPKM 0.980843 0.287493 53.41 54.629112 4.60043 7.217217 3.45206 292.270721 296.087494 274.848663