Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01272 ATGCTGGAGGAGTCGGCATTAAAGCGAATTCTGAAGCAACTGGCATCGGAGCAAATCTTGGAGCTTGCGAGTGTCGGACGCACGGCAATCTTAAAGAAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAATAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAACAACGTCTTGTAGAATCAGCACGTCCGATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGTCAGAAGCGCAAGCGTGGTGATCTGGATATGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTGTAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTACCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGCTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAA 1674 42.59 MLEESALKRILKQLASEQILELASVGRTAILKKEIMASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12362457 12371921 + CmoCh18G012720.1 Cmo18g01272 403045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01272 557 Gene3D - 126 211 IPR036388 -
Cmo18g01272 557 MobiDBLite consensus disorder prediction 207 234 - -
Cmo18g01272 557 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 45 104 IPR013197 -
Cmo18g01272 557 Pfam RNA polymerase III subunit RPC82 191 373 IPR008806 GO:0003677|GO:0006351
Cmo18g01272 557 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 39 557 IPR039748 GO:0003697|GO:0005666
Cmo18g01272 557 Gene3D - 38 111 IPR036388 -
Cmo18g01272 557 Gene3D - 300 392 IPR036388 -
Cmo18g01272 557 Gene3D - 393 481 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01272 K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3 - csv:101211588 877.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g694 . . . Bda07g01875 . . . . . Cmo18g01272 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0081 . Lsi05g01220 . . Cme06g01005 . . . . . . . . . . . . Cma18g01249 . Car18g01156 Cpe09g00088 . . . . . . . . Cla05g00886 Cam05g0973 Cec05g0977 Cco05g0976 Clacu05g0960 Cmu05g0917 Cre05g1001 . Csa03g01718 Chy06g00950 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004329 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01272 Cmo_Chr18 FPKM 3.433862 6.638455 16.105494 18.951965 190.901855 156.350403 181.351349 13.622067 12.193395 12.683276