Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01273 ATGGTGGTAATTAGTCTCTCCATTGGGTCAATTACATGGGTTTTAGTTATGGTTTTGTTCGTGAAAGTGGTGGTTTCATGGTGGGTTTTGCCTGTTTTGGCTCATCAAAAGTTGAAGCGTAATGGGTTTCGAGGTCCTCCTCCAAGCTTTCCTCTTGGAAACATTGCTGAGATGAAGAGGATAAGGAAAGCTTCCGCCGCCATTAATGGCGATGCTCATTCCTTCCCTTCTTCCAAGGTCTCCCATGATATTCATTCCACTGTTTTCCCTCACTTCGCTCAATGGCAGGCCTCTTATGGGAAGAAGTTTATATATTGGTTGGGGACAGAGCCATTTTTATACATTGCAGACCCACACTTTATGAAGAAGATTTCTGAAGCTGTGATGGCAAAGGGTTGGGGGAAGCCAGCCGTGTTCCGAAACGATAGGAGACCAATGTTCGGCGATGGCCTTGTCATGACCGAAGGCGACGACTGGGTTCGCCATCGACACATTCTCACTCCCGCTTTCAACCCCGCTAACTTGAAGGCAATGACAAAGTTCATGGTGGAGTCCACCACTAAAATGCTAAACAAGTGGAGCAGCCTCGTAAACTCCGCCGGTGGCGAAATCGACGTGGAGAGAGAAATCACGGCCACCGCCGGCGACATTATCGCAGAGGCCAGCTTCGGAATTTGCAACGATGGCGGCCGAGACGCCTTCGACTACCTCAGAGCTCTTCAGTTCACTCTCTTCCAAAACAGCACTTACGTGGGCGTTCCTTTCAGCAGCCTTTTTTTCTGCCCGGGCCGAACCCTAAGCGCCAAGCGACTTGGCGCTGCAATTGACCGCCTCTTTTTATCCTTAGTGTCGAAGAGGAAACTGTCGCAGGATTCCTCCTCTGATTTGCTCAGCCGCTTGATTGAGGGTGAGAAGAGCACCGGCGACGGCGGAAAGATGGGGCTGACGACAAGAGAATTGGTGGACGAGTGCAAGACTTTCTTCTTTGGCGGCCATGAGACGACGGCGCTGGCGACTAGTTGGACACTCCTGCTTCTGGCAACGCGGCCGGAGTGGCAAGATATTTTACGAGAGGAAATCAAAGAGGTTATTGGAGATAAGGAAATTGATTTCAACATGCTTTCTGGACTCAAAAAGATGGGATGCGTATTCAGTGAAGTACTTAGGCTATACCCATCAGCTCCTAACATACAAAGACAAGCAAAAGGAGACATTGATGTTGGGAGCATGACCATCCCAAAAGGGACCAACATATGGATAGACATCGTCGCAATGCATCGCGACCCGGATCTATGGGGCGACGACGCGAATGAGTTCAAGCCAGAGCGGTTCGTGGAGGACAGCATTCGTGGCGGGTGCAACCACAAGATGGGATATTTGCCATTTGGATTTGGAGGGAGAATGTGCATTGGTAAAAACTTGTCCTCTATGGAGTATAAGATTGTGTTAACGCTAATTCTCTCTAGGTTTTCACTCTCTCTGTCTCCTAATTATGCTCATTCTCCTGCAACTTTGCTCTCTTTGAGACCTGCCCATGGCCTTCCTCTCATTGTAACCCCCCTTCACCCGTAA 1572 49.36 MVVISLSIGSITWVLVMVLFVKVVVSWWVLPVLAHQKLKRNGFRGPPPSFPLGNIAEMKRIRKASAAINGDAHSFPSSKVSHDIHSTVFPHFAQWQASYGKKFIYWLGTEPFLYIADPHFMKKISEAVMAKGWGKPAVFRNDRRPMFGDGLVMTEGDDWVRHRHILTPAFNPANLKAMTKFMVESTTKMLNKWSSLVNSAGGEIDVEREITATAGDIIAEASFGICNDGGRDAFDYLRALQFTLFQNSTYVGVPFSSLFFCPGRTLSAKRLGAAIDRLFLSLVSKRKLSQDSSSDLLSRLIEGEKSTGDGGKMGLTTRELVDECKTFFFGGHETTALATSWTLLLLATRPEWQDILREEIKEVIGDKEIDFNMLSGLKKMGCVFSEVLRLYPSAPNIQRQAKGDIDVGSMTIPKGTNIWIDIVAMHRDPDLWGDDANEFKPERFVEDSIRGGCNHKMGYLPFGFGGRMCIGKNLSSMEYKIVLTLILSRFSLSLSPNYAHSPATLLSLRPAHGLPLIVTPLHP 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12375086 12377961 + CmoCh18G012730.1 Cmo18g01273 403046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01273 523 Pfam Cytochrome P450 89 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PANTHER CYTOCHROME P450 FAMILY MEMBER 10 517 - -
Cmo18g01273 523 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Cmo18g01273 523 Gene3D Cytochrome P450 29 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo18g01273 523 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 10 517 - -
Cmo18g01273 523 SUPERFAMILY Cytochrome P450 86 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01087 Cmo18g01273 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01273 Cmo-Chr18:12375086 Cmo15g00197 Cmo-Chr15:906216 2.86E-101 dispersed
Cmo18g01273 Cmo-Chr18:12375086 Cmo02g01087 Cmo-Chr2:6598707 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01273 - - csv:101220942 760.37