Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01276 ATGGCTTCCACTCCTTCCACATGTTCGCCCAACTCTCTCCAGCTTCGTCTCGCTCTCAATTGCAAGAATTCCCCCAAATTCCCTTTCCTTCCTGTTCGCGCCACAGTGCGGAAGTTGGATCCTCGCCTCCAGGTGATTTGCCGCCCTATTGTTCATAATAGCGCGAAAATCGCGCGAACAAATGGACTGCGTCGGAATGGAATTTGTTTTGCTGGATCGGATTCCAAGGCTGATGGATTCTCCGGGTGGTCGGAATCGGATTCCGGCGAGGAGGATTTGAACTTGCGGACAAAGAATTGGTTGGCAGGGTTGGTGGGGATTGGAATTACTGGATTCATCCTTGTCTCTGGAATCACCTTTGCAGCATGGTCGATAAACAAGCAGAATTGTTCCAAAAATGATGCAACTCTCAACAAAAATCGAATTGGTGCCGTTGCTGATGTCGAGGAGTTATCAGGAAATGATGTTGAATCTTCATCTAATAATGATAATGTCAATAATGTTGCTTTCTTGCAAGAGGATATCCAATCTGATTCCTCGTTAGCTGTTACGTCGGTCGCTTATGGAAGATCTGAGATCGATTCGGACGTTGATTCTGGTTTTAAAGATGTAAATTCTGGTACAGAAGTGTTAACTTCTGAACCTGAAATGAATGATGAACCGGATAACTCGCCTGAAACGAAGTATGATTTCAGCTCTGAAAAGTTACCAGTCTATGATGATAGTTCATCAAATTATAATTCTGGCTACCAGGATGAGACAGCTGATCCTCCTGTAAATGAAATCGACGATTCTTCATTGCATGAATTGGGATTAGTTGACAAAGAGACCGTGACCGAATCATTGGAAGGAGTTCTGAACCCTGGCAAAACCAAACAGCTCTTATCTGAGGAAACTGCATCGACCATAGAACAACAAATAGGAAGAGGATTATCCAAAGCTGCGTTTGTCTCTGTCACAGCTTATCCACTGGCAGATGATCAAGAAGAACTAAATCATGAAACAACCATGAATAGTGTTCCTGCTCCTCTGGTTTCTGCAGCTGTTAAGACACTTCCTGGCAAGGTTCTAGTGCCTGCAGTTGTGGATCAGGTTCAGGGGCAGGCCTTGGCAGCACTGCAAGTTTTAAAGGTGATCGAGTCTGAAGTTGAGCCGAGTGGTCTATGTACTCGTCGGGAATATGCTCGTTGGCTAGTGTCTGCAAGCTGTGCGCTTTCAAGGAACACTGCATCTAAAGTATACCCAGCAATGTATATAGAGAATGTTACCGAGCTTGCTTTTGATGATATTACTCCTGAAGACCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCGAGCAAGCTTTCGAGACATGATATTCTTTCTTCATTGGACGACGACGAGGGATACACAAGGCTATTCCAGCCGGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATCGTAAGCGAGGAGCTTGCAAGGATTGAAGCCGAGTCAATGGCGGAGAACGCTGTGGCTGCACACAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAACGCCAGCTTCGAGAAGGAACTTTCCATCGAAAGGGAAAAGGCTGACGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCTGAAAGAGAGAGAGATAATATCGCCTTGATGAGGGAACGTGCTGCTATCGAATCGGAAATGGAGGTTCTTTCGAGGTTAAGAAATGAGTTGGAGGAGCAGTTGCAAGGCCTGATGAGTAATAAAGTAGAGGTATCTTATGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGATTTCCCGCTTGCAATATGAGCTTGAGGTTGAGAGAAAGGCGTTGTCCATGGCCAGAGAACAAGCAAAAGCACTAGAGGAGGCAAGAGATCGCTGGGAAAAGCGGGGCATCAAAGTAGTCGTCGACAGCGATCTCCGGGAACAGGAATCTGCTGGAGATACTTGGCTCGATTCCAGCAAACAGTTTGCAGTGGAGGAAACGGTTGGTAGGGCCGAGAACTTAATGGACAAGCTTAAAGGAATGGGTAGAGAAGTAAGAGGGAAATCCAAAGACATAATTGAGATGATCATCCAGAAGATAGCTCTGCTGATATCAAACTTGAGACAATGGGTCCGGAATGCTGGTGAGAAGGCTGAAGATGTAAAGAATGTGGGCATCGCAAGGGCAAGTAGATCGGCAACTGAACTGCAACAGAGCAGTGCAGAGATGGGGTTGGCCCTGAAGGAGGGAGCTAAGCGAGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTTCCCAAAAGTTCAGAACATCGTACGGTTAA 2400 45.46 MASTPSTCSPNSLQLRLALNCKNSPKFPFLPVRATVRKLDPRLQVICRPIVHNSAKIARTNGLRRNGICFAGSDSKADGFSGWSESDSGEEDLNLRTKNWLAGLVGIGITGFILVSGITFAAWSINKQNCSKNDATLNKNRIGAVADVEELSGNDVESSSNNDNVNNVAFLQEDIQSDSSLAVTSVAYGRSEIDSDVDSGFKDVNSGTEVLTSEPEMNDEPDNSPETKYDFSSEKLPVYDDSSSNYNSGYQDETADPPVNEIDDSSLHELGLVDKETVTESLEGVLNPGKTKQLLSEETASTIEQQIGRGLSKAAFVSVTAYPLADDQEELNHETTMNSVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIESEVEPSGLCTRREYARWLVSASCALSRNTASKVYPAMYIENVTELAFDDITPEDPDFASIQGLAEAGLISSKLSRHDILSSLDDDEGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKADAVEKMAEEAKQELERLRSERERDNIALMRERAAIESEMEVLSRLRNELEEQLQGLMSNKVEVSYEKERINKLRKEAEIENQEISRLQYELEVERKALSMAREQAKALEEARDRWEKRGIKVVVDSDLREQESAGDTWLDSSKQFAVEETVGRAENLMDKLKGMGREVRGKSKDIIEMIIQKIALLISNLRQWVRNAGEKAEDVKNVGIARASRSATELQQSSAEMGLALKEGAKRVVGDCREGVEKISQKFRTSYG 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12388723 12393746 + CmoCh18G012760.1 Cmo18g01276 403049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01276 799 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 147 466 - -
Cmo18g01276 799 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 269 - -
Cmo18g01276 799 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 269 - -
Cmo18g01276 799 MobiDBLite consensus disorder prediction 237 254 - -
Cmo18g01276 799 ProSiteProfiles S-layer homology (SLH) domain profile. 423 501 IPR001119 -
Cmo18g01276 799 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 467 796 - -
Cmo18g01276 799 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 147 466 - -
Cmo18g01276 799 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 467 796 - -
Cmo18g01276 799 MobiDBLite consensus disorder prediction 197 263 - -
Cmo18g01276 799 Coils Coil 535 660 - -
Cmo18g01276 799 MobiDBLite consensus disorder prediction 221 235 - -
Cmo18g01276 799 Pfam S-layer homology domain 427 484 IPR001119 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01276 - - - mcha:111011467 1010.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01614 Cmo-Chr4:8233022 Cmo18g01276 Cmo-Chr18:12388723 1.04E-25 dispersed
Cmo18g01276 Cmo-Chr18:12388723 Cmo16g00127 Cmo-Chr16:572977 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g707 . . . . . . . Bma14g02074 . Cmo18g01276 . . . . . . Cpe14g00103 Bhi01g01302 Tan01g0237 . . . Mch10g0147 . . . . . . . . Cone1ag1163 Cone5ag0873 . . . . . Cme06g01012 . . . . . . . . . . . . . Car16g00107 Car18g01161 Cpe09g00084 . . . . . . . . Cla05g00890 . Cec05g0981 . . Cmu05g0921 . . Csa03g01723 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011727 2 3 1 1 1 0 3 0 1 0 0 0 1 1 1 1 1 2 1 0 1 1 1 1 1 0 0 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01276 Cmo_Chr18 FPKM 2.433333 4.404092 5.237783 6.43916 16.840687 16.859409 17.796211 6.701275 8.060486 8.66065