Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01279 ATGGCCGCTGCCGACGAGATTGGACAGCCGCTGCAATTCGACGTCGAACACACTATATTTGTTGCGGTGGGAACGGATGTCCACGACTCCGAAACCACTCTGATTTGGGCTGTGCAGAACTTCGCTGGGAAGAAATTTTGTGTGCTTCACGTTCATCAGCCTGCCCATCTTGTTGTTCCTCGGAAAAATGAAGAGCCGTCTTCCAATACACCAAAAGAACATGTAACAAAGGCATTTGATGAACCTGAAAGGCAAAAGCCTTTAGAACTTCTTAATCAATATGTTTTCATTCTTGCCAAACTGGGGGTACAAGCGCGAAAAGTATGGACCGAGACGAACAGCGTTGAGAAAGGGATTGTTGAAATTATTTCTCAGTGCAGTATTAAATGGCTAGTCATGGGTTTAGACGCAGAAAGATACAATCTCAAGACGTCCAAGAAAGCTTTCTATGTATGCCAACAAGCACCCATATGCTGCCACATTTGGCTTGTCTGCAGAGGGCGCCTTATATTCTCAAGGGAGGGCGGAATGGGAAGATTCAATCCATCACTGCTGCAAACTTCGGAAATAGGACTGGACCAATCTAACCATCTGAGACTGGACTTCGTAGATGCTCAACAAAAGGAGTATGCATCTGATAGATCTCAAGGTCTGGTGGATCCAAAACATTCCAATAATGAAGCCATTGGTACTTCAAGAACAAGACTGTTGTTAAGGAATGAGGTTAATTCATTAGAAAGCTCATGTGGGGAGGAGGTAAAAAAAAGAAAAAAGATGGAAGAAATTTTAGAGACAGGTAAAAAACTAGCAGAACAGATGAACAAAAAGCGTGACAAGCTCTCGAAAGAACTATACGACGTCGAAGAGCAGAAATTATTTCTTGAAAGAAAAGCTTCAGAGTACCGTTGTGAAGTGAAGGAGTTGGAGAAGAAAATGTTTGATGCTGTTGGCCTCTTGGTAAGCTTCAGGGAAAAACGAGATAAGTTGCAGATAGAACATGAAGAAGCAAAGAACAAGCTTAGACTGCTGAAGAACATGCTTAAAATGGAACCTACATGCTTTCACAGCCTAGAAATGCCTACATTCTCATTCATGGAGATAATTGAGGCCACCAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGTAGTGTTTATAAAGGCCACCTTCGCCACGTGGACGTTGCTCTAAAAATGTTGCCTTCATACGGTTCTCATTCACAATCGACGTTCCAATACGAGATTGAAGTTTTGAGTAGGGTAAGGCATCCAAACCTGGTTACAATTATTGGGGCATGTCCAGAATCTAGGTTGATAGTCTATGAGAATTTGAAAAATGGCAGCTTGGAAGAGCACCTATCGTGCAAAGGTCGATATCGCCCGCTTCCATGGCAGATACGGATTCGGGTTGCTGCTGATATCTGCTCAGCTCTTATATTTCTCCATTACAACGAGCCTTGCATTGTCCATGGAGACATAAAACCAAGCAAAATCCTACTTGATGCCAATTTTGTTGCCAAACTAGGTGGCTTGGGCATCTCTCGCTTGATCCCACGAGAATGTCTTGAGATTGGAAGGTTCACTCCAGAATCAGACGTTTACTCTCTTGGTGTTACTTTTCTGCGTATGTTAACTGGCAGAGCAGCTTCGGGAATTGTAAAAGATGTACAATATGCTTTAGAGAATGATAAGATTGGCGCCGTTTTGGACTCATCAGCTGGAGATTGGCCTCATGATCTAGCAGAACAATTGGCTCTTGTGGCTTTGAGATGCTGTGCGAAGGAAAAGTCGGATCGGCCTGACCTCGTCTCGGAAGTATGGAGTGTTTTGGAGCCTATGAGATCCATTGCCTCAGCATCGTTTTCAAGTTCGAAGCAACACTCTCGAGTGCCTGCCCATTTCACGTGTCCTATTTTTCAGGAAATGATGAAAGATCCACTCATTGCTGCAGATGGATTCACATACGAAGCTGATGCAATAAAAGGATGGTTCAAAAGTGGGCATGACACTTCTCCCATGACAAATCTTAAACTTGAACACTGTAATCTTGTGCCAAATTGTGCTCTTTTGAATGCAATTCAAGAGTGGCAGCAGCAGCTATGA 2112 43.51 MAAADEIGQPLQFDVEHTIFVAVGTDVHDSETTLIWAVQNFAGKKFCVLHVHQPAHLVVPRKNEEPSSNTPKEHVTKAFDEPERQKPLELLNQYVFILAKLGVQARKVWTETNSVEKGIVEIISQCSIKWLVMGLDAERYNLKTSKKAFYVCQQAPICCHIWLVCRGRLIFSREGGMGRFNPSLLQTSEIGLDQSNHLRLDFVDAQQKEYASDRSQGLVDPKHSNNEAIGTSRTRLLLRNEVNSLESSCGEEVKKRKKMEEILETGKKLAEQMNKKRDKLSKELYDVEEQKLFLERKASEYRCEVKELEKKMFDAVGLLVSFREKRDKLQIEHEEAKNKLRLLKNMLKMEPTCFHSLEMPTFSFMEIIEATRNFDPSWKIGEGRHGSVYKGHLRHVDVALKMLPSYGSHSQSTFQYEIEVLSRVRHPNLVTIIGACPESRLIVYENLKNGSLEEHLSCKGRYRPLPWQIRIRVAADICSALIFLHYNEPCIVHGDIKPSKILLDANFVAKLGGLGISRLIPRECLEIGRFTPESDVYSLGVTFLRMLTGRAASGIVKDVQYALENDKIGAVLDSSAGDWPHDLAEQLALVALRCCAKEKSDRPDLVSEVWSVLEPMRSIASASFSSSKQHSRVPAHFTCPIFQEMMKDPLIAADGFTYEADAIKGWFKSGHDTSPMTNLKLEHCNLVPNCALLNAIQEWQQQL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12396337 12402249 + CmoCh18G012790.1 Cmo18g01279 403052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01279 703 ProSiteProfiles U-box domain profile. 632 703 IPR003613 GO:0004842|GO:0016567
Cmo18g01279 703 Gene3D Phosphorylase Kinase; domain 1 354 446 - -
Cmo18g01279 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 703 IPR013083 -
Cmo18g01279 703 Pfam U-box domain 633 702 IPR003613 GO:0004842|GO:0016567
Cmo18g01279 703 SUPERFAMILY RING/U-box 625 702 - -
Cmo18g01279 703 ProSitePatterns Protein kinases ATP-binding region signature. 380 401 IPR017441 GO:0005524
Cmo18g01279 703 Gene3D HUPs 11 136 IPR014729 -
Cmo18g01279 703 SUPERFAMILY Protein kinase-like (PK-like) 347 605 IPR011009 -
Cmo18g01279 703 PANTHER OS02G0152300 PROTEIN 13 211 - -
Cmo18g01279 703 PANTHER OS02G0152300 PROTEIN 241 702 - -
Cmo18g01279 703 ProSiteProfiles Protein kinase domain profile. 374 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01279 703 Coils Coil 263 311 - -
Cmo18g01279 703 CDD RING-Ubox_WDSUB1_like 637 678 - -
Cmo18g01279 703 MobiDBLite consensus disorder prediction 60 79 - -
Cmo18g01279 703 CDD STK_N 18 167 - -
Cmo18g01279 703 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 241 702 - -
Cmo18g01279 703 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 211 - -
Cmo18g01279 703 SMART Ubox_2 636 699 IPR003613 GO:0004842|GO:0016567
Cmo18g01279 703 Gene3D Transferase(Phosphotransferase) domain 1 447 634 - -
Cmo18g01279 703 Pfam Protein tyrosine and serine/threonine kinase 379 605 IPR001245 GO:0004672|GO:0006468
Cmo18g01279 703 Coils Coil 319 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01279 - - - cmax:111467600 1339.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00127 Cmo-Chr16:572977 Cmo18g01279 Cmo-Chr18:12396337 0 dispersed
Cmo17g00412 Cmo-Chr17:2732800 Cmo18g01279 Cmo-Chr18:12396337 6.85E-158 dispersed
Cmo18g01279 Cmo-Chr18:12396337 Cmo15g01416 Cmo-Chr15:9652325 5.25E-85 dispersed
Cmo14g02105 Cmo-Chr14:15250662 Cmo18g01279 Cmo-Chr18:12396337 2.55E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75087 PF07714 PK_Tyr_Ser-Thr 1.70E-26 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01279 Cmo_Chr18 FPKM 0.29385 0.398161 0.854311 0.82571 1.737683 2.099493 1.905601 0.993935 0.754973 1.2742