Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01282 ATGGTCAAGATGCCAGTTGCAAAACTCAAGAATTCTAACTATCCAGATGTGATGAAATCGGAGGAGGGAAATGATTCTCTAGACACTATTATTAGACAGGCAATTGGCAAAGAGCCTTTTCTTTCTTTCTCAAGAGCTGGTGAGAGCCCAGTCCAGTGGATTCAACTACTTCATGCTCTAGATCATCATGAACTCCCAGGTTGGCCCTTGCTATCTCCTTTAAAGGTTCAAATGCAGAAGTGTGACAAGTGTCTCCTGGAATTTTTCTCGTTTATCAACTATAGAAGACATATACGAGTGTATCATAGGATGAAAAAGCCTGATAAGGATTCTGCCAAAACTAGGGATTTACTAGCAGCATTTTGGGACAAGGGAATGCAAGGGTCAGCCGTTATCAAGAACCTGACGGCCATTATTGGAAAACCGAGATTTTCTGCCCTACCACATGTTTATTTGAGGGCAGGTTCTGCCCTTTTGGACATTGTACAAGGTAGACCGTCTAGGTTTCCCCTCTCTTCGCAGGAGCTATTTGAAATTCTTGACAATGCAAGTGAAAAAACATTCCTATGTGGAACTTCTTTCTCTATGCAAAAATATATATTTGATGGCGGGACTGTAAAGATCGGTCTTGAAACTAAAAACTTAGTTGCTTGCATGAGCTTCTTGTTGGAAGAGAAATTGGTCAAAACATGGCTTGCTGACAAGGATGCTGAAGCTTTGAGGTGTCAGAAGTTGCTGGTAGAGGAGGAAGAAGCTGCTCAAAGGAGACAAGCGGAGCTGTTGGAAAGAAAAAAGCAGAAGAAGCTAAGGCAGAAAGAACAAAGGTCAAAGGAGCAAAAACGCGAAGAGAAGGCTGATATGGAAGCGAGTGTAAATGAAACAATTGAAGACGTGTTACCTGAAGAATCATCTAGCCCTCAAACTGAATGCCACTCAGAAGGGGACTCTCTGAGCATATTGGCTGATCACATGCCATCATCTATTGAAACATCTCAACAATCTCTAACTGATGAAGACGAAGATTCTGAGTCTTGTTTTGGGTCTCACAGTGGCTACCCTGAACATCTTCCTATTGATCACAATGGTGAACGGCAGAAAATACAAATGAATGGCCATAAGCATGTAATTGCTCAGTGGCAGGCATTGCCTAAGACGCAAAGGGGACTTTCTAACGGTTATCATGCAGAACAGAATTATCAGGGACACAAAAATGGAGATATGCGAAGGCATGGAAACCATGTGCTTTCAAGGGCTGCGCCCATGGCTAATGGGAAAAAAGTATGGAGCCGGAAGCCCAAACCAGAAAGAGATGGAGGCCGTTACCAAGCCAGGATTCTTGAAGAGACAACGGCCCAAGCGGAGGAAATTAAGAGCCATGAGGTTTTGATTGGTTCTATTTCAGTGGCACTAGGAAATTGCAACCAAGAGAGTAAAAATCCAGTTGGAGCTCCAGATGATTGCCAGGATGGTCATCAAACGCCTAAGAAGATTAATAATCATGTTCAGAAGTTCATTAAGCCAGACTCTGTTCAAACTGCAACAAATCGGGTGATGGTTAAGCTTTGGAGGCCAGTTGGTCGTAATGGAACCAAATATGCAATGCTAGAGCAAAGTGACAATGAAGAATCTGAAGCTGAAGGGATAACTGAAAAGCTAGAAGATGAGGCGCTGCTGAATACATATTCTCCACGATCCTCTTCCTTGGATGGTGACAATGGGGACTTCGGAAACAACAACTCTTTGATCCAGGAAGAGCCTGCGCAATCAGTTGGCCTGGAGTTCTCTAGTCGTGCTGCAAAAGCTTTCCTTGCACAGAGGTGGAAGGAGGCTATAACAGCCGACCACGTCAAATTGAATCTACCCTCCGATTCTGAGTCTTCTCGATGCTCTGAAATTCAAAATGACACAGAAACTTCTGCATTTCAATTGTCCAACTTTGACAGACGCAATGTTCTTGGCAATGCGATGTCAATTAATGTCGACCCTCCCAAGTCGTCCTCAGCCAATGAAGCCGGCAAGTCCAAGTTCAGGACAAAATTTGAAAAGGGTGCGAAGATAAAGTACATTCCCAAACTTCCAACCACTACCTGA 2091 43.62 MVKMPVAKLKNSNYPDVMKSEEGNDSLDTIIRQAIGKEPFLSFSRAGESPVQWIQLLHALDHHELPGWPLLSPLKVQMQKCDKCLLEFFSFINYRRHIRVYHRMKKPDKDSAKTRDLLAAFWDKGMQGSAVIKNLTAIIGKPRFSALPHVYLRAGSALLDIVQGRPSRFPLSSQELFEILDNASEKTFLCGTSFSMQKYIFDGGTVKIGLETKNLVACMSFLLEEKLVKTWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKKQKKLRQKEQRSKEQKREEKADMEASVNETIEDVLPEESSSPQTECHSEGDSLSILADHMPSSIETSQQSLTDEDEDSESCFGSHSGYPEHLPIDHNGERQKIQMNGHKHVIAQWQALPKTQRGLSNGYHAEQNYQGHKNGDMRRHGNHVLSRAAPMANGKKVWSRKPKPERDGGRYQARILEETTAQAEEIKSHEVLIGSISVALGNCNQESKNPVGAPDDCQDGHQTPKKINNHVQKFIKPDSVQTATNRVMVKLWRPVGRNGTKYAMLEQSDNEESEAEGITEKLEDEALLNTYSPRSSSLDGDNGDFGNNNSLIQEEPAQSVGLEFSSRAAKAFLAQRWKEAITADHVKLNLPSDSESSRCSEIQNDTETSAFQLSNFDRRNVLGNAMSINVDPPKSSSANEAGKSKFRTKFEKGAKIKYIPKLPTTT 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12406382 12410698 + CmoCh18G012820.1 Cmo18g01282 403055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01282 696 MobiDBLite consensus disorder prediction 264 314 - -
Cmo18g01282 696 MobiDBLite consensus disorder prediction 328 347 - -
Cmo18g01282 696 MobiDBLite consensus disorder prediction 297 314 - -
Cmo18g01282 696 ProSitePatterns Zinc finger C2H2 type domain signature. 81 102 IPR013087 -
Cmo18g01282 696 MobiDBLite consensus disorder prediction 657 676 - -
Cmo18g01282 696 MobiDBLite consensus disorder prediction 659 673 - -
Cmo18g01282 696 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 693 - -
Cmo18g01282 696 Coils Coil 535 555 - -
Cmo18g01282 696 Coils Coil 247 297 - -
Cmo18g01282 696 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 107 IPR013087 -
Cmo18g01282 696 MobiDBLite consensus disorder prediction 264 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01282 - - - cmos:111449426 1325.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00127 Cmo18g01282 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01282 Cmo-Chr18:12406382 Cmo16g00127 Cmo-Chr16:572977 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g717 . . . . . . . . Cmo16g00127 Cmo18g01282 . . . . . . Cpe14g00101 Bhi01g01291 . . . . . . . . . . . . . Cone1ag1169 . . . Lsi05g01215 . . Cme06g01016 . . . . . . . . . . . Cma16g00117 Cma18g01255 Car16g00104 Car18g01165 Cpe09g00080 . . . . . . . . . . . . . . . . Csa03g01726 Chy06g00956 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11567 None None None None Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01282 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.804851 0.0 0.507942 0.419795