Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01283 ATGCCTTCGTGGTGGGGGAAGCCATCATCCAAAGAAGTAAAGAAGAAAACAAGCAAGGAAAGTTTCATTGACTCATTACACCGTAAGTTCAAGAATTCACCTGAAGGTAAAGTAAACAGCCGATCAGGAAGTTCTTGTAGACGTGGTGGTGACACTATATCTGAGAAATCACCTCTATCAAGATCACCATCACCTTCCAAAGAAGTATCGAGATGTCAAAGTTTTGCTGGAAGATCACATTCTCACCAACTGCCACTTCCAGAACTGCACCCTATAGGTATAGGTCCCACAGACTCTGGGATTAGTGTGACGGCAAAATCAAAATTAGAGAGAAGCTCTAAGACATCTTCATTCCTACCACTCCCTAGACCTGCATGTATCCGGAGGAGGCCGGATCCTGCAGATTTGGATGGAGATTTAGTCACTGGTTCAGTCTCTGGTGAGTCCTCAAGTGATAGTGATGATCCCATTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACGTTGGGACTAGAACTGTGGTAGGTTCTATTGAACCTAGTGCAACTCTCAAGGACCAGTCTTCTACTGTTGTGCAAACAAATTTAAAAGAGGGCAAGAAAGCAGAAAGTCTTTCATTTCCTCATAAGAAGCCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAATGTAACAAATCTTCAAGTTCCTCGTCATGGGGCATTCTTTAGCGCTCCAGATAGTTCCATGTCTAGTCCTTCTAGAAGTCCTATGAGGGTATTTAGCACAGAGCAAGTCATGAACACTGCTGTTTGGTCTGGAAAGTCTCACTCAGATGTCATTTTAGGTGGCTCTGGCCACTGCTCCAGTCCTGGTTCTGGACACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGCCCACTTCTTTTGGCAACAAAGTAGGGGCAGCCCCGAATATTCTCCAGTACCTAGTTCTAGAATGACTAGTCCTGGCCCAAGCTCCAGAATTCAAAGTGGTGCTGTTACACCTATTCATCCTAGAGCAGGAGCTCCGCCTGCTGAATCACAAACTTGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATTGCAATCTCAAACTCTTCTCCATTTTCTCATTCAACCTCTGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCTGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGTGGCACATTTGGGCATGTGTACGTTGGTTTTAATAGCGAAAGTGGAGAAATGTGTGCAATGAAGGAGGTCACCTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTACGGCATCCCAACATTGTGCAATATTATGGTTCAGAATCAGTGGGTGATAAACTCTATATTTATCTGGAATATGTATCTGGTGGCTCCATTTATAAATTACTACAAGAGTATGGACAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAACTACAGTGCACAGGGACATTAAAGGAGCAAACATACTTGTTGACCCTAATGGCCGTGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACAGGCCAATCATGTCCACTGTCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTTGCCGTTGATATTTGGAGTCTTGGATGCACTGTTCTGGAGATGGCAACTACAAAGCCACCTTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGCAATAGCAAAGAACTCCCAGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGGAACCCGTATCATCGACCTACAGCTGCTCGACTTTTGGATCATCCTTTTGTCAAATATGCTGCACCTGTAGAGAGGCCTATTTTGAGCTCTGAACCCTCTGATGCAACTCCTGGGGTTACAAACGGAGTGAAGACTTTGGGTATTGGCCAATCACGTATTACTTCTGTGGACTCGGATAGTAGACTCGCAGTTCATTCTTTAAGAGTCTCAAAACCTGTTCTTCATGCCAGTGACATCAACATTCTCAGAAACATCTCATGTCCTGTTTCACCAATTGGAAGCCCCCTTTTACGCTCACGATCACCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCCATATCAAGTCCAAGAACTACTTCAGGCTCGTCGACACCTTTGACAGCATGTGGTGGTGCTATTCCTTACAACCACCTGAAACAAGCTATATACTTGCAGGATGGATTTGGAAGCATGCCGAAGTCCTTAAATAATAGTCCATACAGCAGTGGTCTCTCGTTCCATGATTCAAATCCCGATATTTTTCGAGGGTTGCAGCATGGGGCTCCCATCTTCTCTGAAATGATACCAGAAAATGATATCCTGGGCAAACAGGTTGGAGTCGGAAGACCTGCTTATGGTGAACTGTATGATGGACAGCAGGTCTTGGCTGATCGAGTGTCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACCTTTCTCTTGATTTGAGTCCTAGCACTACCTTGTCTGGCCGCATGAATGGTATCTAA 2691 45.0 MPSWWGKPSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSCRRGGDTISEKSPLSRSPSPSKEVSRCQSFAGRSHSHQLPLPELHPIGIGPTDSGISVTAKSKLERSSKTSSFLPLPRPACIRRRPDPADLDGDLVTGSVSGESSSDSDDPIDSRQRSPQATDYDVGTRTVVGSIEPSATLKDQSSTVVQTNLKEGKKAESLSFPHKKPSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRVFSTEQVMNTAVWSGKSHSDVILGGSGHCSSPGSGHNSGHNSMGGDMAAHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSTSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSESVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKTTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPYHRPTAARLLDHPFVKYAAPVERPILSSEPSDATPGVTNGVKTLGIGQSRITSVDSDSRLAVHSLRVSKPVLHASDINILRNISCPVSPIGSPLLRSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIYLQDGFGSMPKSLNNSPYSSGLSFHDSNPDIFRGLQHGAPIFSEMIPENDILGKQVGVGRPAYGELYDGQQVLADRVSRQLLRDHVKTNLSLDLSPSTTLSGRMNGI 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12410799 12417034 - CmoCh18G012830.1 Cmo18g01283 403056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01283 896 MobiDBLite consensus disorder prediction 368 400 - -
Cmo18g01283 896 SMART serkin_6 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01283 896 MobiDBLite consensus disorder prediction 199 225 - -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 311 337 - -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 36 80 - -
Cmo18g01283 896 CDD STKc_MEKK1_plant 406 663 - -
Cmo18g01283 896 SUPERFAMILY Protein kinase-like (PK-like) 405 664 IPR011009 -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 100 119 - -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 1 173 - -
Cmo18g01283 896 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01283 896 MobiDBLite consensus disorder prediction 740 773 - -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 311 409 - -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 9 35 - -
Cmo18g01283 896 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01283 896 Gene3D Transferase(Phosphotransferase) domain 1 405 682 - -
Cmo18g01283 896 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Cmo18g01283 896 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 811 - -
Cmo18g01283 896 MobiDBLite consensus disorder prediction 742 773 - -
Cmo18g01283 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 811 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00126 Cmo18g01283 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01082 Cmo-Chr3:8095928 Cmo18g01283 Cmo-Chr18:12410799 4.11E-144 dispersed
Cmo07g00829 Cmo-Chr7:3882446 Cmo18g01283 Cmo-Chr18:12410799 1.40E-143 dispersed
Cmo16g00126 Cmo-Chr16:566206 Cmo18g01283 Cmo-Chr18:12410799 0 wgd
Cmo18g01283 Cmo-Chr18:12410799 Cmo02g01089 Cmo-Chr2:6606331 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75088 PF00069 Pkinase 3.20E-70 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01283 K20717 - csv:101214961 1522.68