Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01307 ATGGCGCACTCTCTTGTTCCAGCATCGCTCTCGTCCGCCTTGGCTTCCAACCGGATGCATACTTTGATTTACTCTTTCCCAGTCATATCCAAAGGGATTGAATCTGTTAAATTTTCGTTGATTGCAAGCAGTTCAGTGGTATGTGCTGCAAAAGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAGGAAGAGGATTGGGACCATATCCAAGGCAGCAAAGCTCGTTGATTGTGTCAAGGGACTGTCTAACGTGAAAGAGGAAGTCTATGGGGCTCTTGATTCCTTCATTGCCTGGGAACTAGAGTTTCCTCTTATTACTGTAAAAAAGGCCCTGAAGACCTTAGAGATCCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGTAGCTATTTCACATTATTAAATGCCTTAGCTGCAGATGGAAGACTTGATGAAGCTGAAGAGCTTTGGAACAAATTATTTTCTCAGCATCTGGAGAGCATGCCTCGCATATTCTTCCATAAAATGATATCCCTTTACTATGAACGGGATATGCACGACAAGTTATTTGAGATATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAGTATGGCAATTGTCACTAAGCTCGGAAATGTCTTCCAAAAGTTGGGTATGCTAGATAAATATGAAAAGTTGAAGAAGAAATATCCCCCACCGAAATGGGAATATCGTTACATAAGAGGAAAGCGCGTAAAAATACGAGCAAAGAATCTGCACGAAAATGGTAGTTCCAACAATGGTTCAGGTGAACTCGACAAAAAGGAGCATAGTTCAACAGAAGAACTGTTGGAGGAAGATGAAATAACTTCCCAAGATTCGAGTCTTGAAGATGATGAAATGAGTGAAGACCCAGATGAAGCCTTGGAAGATGAAAGTATGATGTTGAAAGAATCCACTTTTGAGCACGATTTCATGGGATTTGGACAATTGTAA 999 41.54 MAHSLVPASLSSALASNRMHTLIYSFPVISKGIESVKFSLIASSSVVCAAKGPRPRYPRVWKTRKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEIQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAADGRLDEAEELWNKLFSQHLESMPRIFFHKMISLYYERDMHDKLFEIFADMEELGVQPSMAIVTKLGNVFQKLGMLDKYEKLKKKYPPPKWEYRYIRGKRVKIRAKNLHENGSSNNGSGELDKKEHSSTEELLEEDEITSQDSSLEDDEMSEDPDEALEDESMMLKESTFEHDFMGFGQL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12512257 12514655 + CmoCh18G013070.1 Cmo18g01307 403080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01307 332 Gene3D Tetratricopeptide repeat domain 74 308 IPR011990 GO:0005515
Cmo18g01307 332 PANTHER OS01G0757700 PROTEIN 21 305 IPR044646 -
Cmo18g01307 332 PANTHER OS01G0757700 PROTEIN 21 305 - -
Cmo18g01307 332 Pfam PPR repeat 183 208 IPR002885 -
Cmo18g01307 332 Pfam PPR repeat 146 167 IPR002885 -
Cmo18g01307 332 MobiDBLite consensus disorder prediction 258 332 - -
Cmo18g01307 332 MobiDBLite consensus disorder prediction 286 312 - -
Cmo18g01307 332 MobiDBLite consensus disorder prediction 271 285 - -
Cmo18g01307 332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01307 - - - cmax:111467557 600.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00181 Cmo-Chr4:920825 Cmo18g01307 Cmo-Chr18:12512257 1.02E-57 dispersed
Cmo18g01307 Cmo-Chr18:12512257 Cmo19g00309 Cmo-Chr19:2301762 5.07E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g784 . . Bda05g00096 . Bpe03g00260 . Bma10g01260 . . Cmo18g01307 . . . . Sed07g2526 . . Bhi01g01417 Tan01g0183 Cmetu10g1018 . Hepe07g0115 Mch10g0118 . . . . . . . . . . Cone14ag0053 . Lsi05g01184 . . Cme06g01045 Blo07g00369 . . . . . . . . . . . Cma18g01276 . Car18g01190 Cpe09g00061 . . . . . . . . Cla05g00923 Cam05g1011 Cec05g1015 Cco05g1011 Clacu05g1000 Cmu05g0953 Cre05g1034 . Csa03g01757 Chy06g00985 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010882 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01307 Cmo_Chr18 FPKM 0.333643 0.40382 1.365483 1.819077 7.496068 7.822276 8.380563 0.265458 0.448302 0.210495