Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01309 ATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGA 510 55.29 MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12519713 12522157 + CmoCh18G013090.1 Cmo18g01309 403082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01309 169 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT 1 164 IPR006806 GO:0022904
Cmo18g01309 169 PANTHER BNAA02G10640D PROTEIN 1 164 - -
Cmo18g01309 169 Pfam ETC complex I subunit conserved region 22 88 IPR006806 GO:0022904
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01309 K03949 NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5 - csv:101209685 320.087
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00096 Cmo18g01309 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00096 Cmo-Chr16:442596 Cmo18g01309 Cmo-Chr18:12519713 1.62E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g788 . . Bda05g00097 Bda07g01907 Bpe03g00259 . Bma10g01261 Bma14g02038 Cmo16g00096 Cmo18g01309 . . . . Sed07g0975 . . Bhi01g01419 Tan01g0181 Cmetu06g0254 . Hepe07g0113 Mch10g0116 . . . . . . . . Cone1ag1199 Cone5ag0898 . . Lsi05g01182 . . . Blo07g00363 Blo09g00054 . . . . . . . . . . Cma18g01278 Car16g00081 Car18g01192 Cpe09g00059 . . . . . . . . Cla05g00926 Cam05g1013 Cec05g1017 Cco05g1013 Clacu05g1002 Cmu05g0955 Cre05g1036 . Csa03g01759 Chy06g00987 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006769 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01309 Cmo_Chr18 FPKM 1.215278 1.994653 2.133783 3.182393 1.207511 0.0 1.803779 0.217961 0.995844 0.435563