Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01317 ATGGCTGTAGGTGCTTCTTCGTCGTCTCGTGATGGCTCGTGGGTTATGTTCGCTTTGGCTGTTGTATGGCTGATTCGGGCTTGCATGGCTAGCCAAATTGTAATTGGAGCGAGGTTGGTTGCTACTGATCGTGAGAGAAACACTTGGGTTTCTGATAATAGTACTTTTGCGTTCGGGTTTAGTCCGGCTAGTAGTGGCGCGGTTGATCGATTTCTACTTGCCATATGGTTCGCCAAGCTTCCCGGGGATCGAACCGTGGTTTGGTCAGCTAACAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGTTTGATGCCACCGGAAACCTCGTCCTTTTGGACGGTGGCGCCACCGTCTGGTCTTCCAACACCTCCGGAGACGGAGCGGAGTTCGCCGTCATGTCAGAATCTGGCAACTTCATCCTCTTCAACGCCGAGCGAATCCCTATTTGGCAAAGCTTTTCACACCCATCTGATACGCTTCTCCCAAATCAACCTCTATCAGTGTCTTTAGAGCTTACAACTTCAAAATCCCTCTCCCATGGCGGATATTATGCCCTTAAAATGCTCCAACAACGCACCACTCTCAAACTCGCCTTGACATTCAATTTGCCTGAAAATTATGCGGGGTTGCCCGAATCTTACTCAAATTACTCCTACTGGTCCGCCCCTGCCATTTCCAATGTAACAGGGGAAGTCATCGCTGTTCTAGACGAAGGCGGAAGCTTCGGTGTGGTCTATGGCGACTCCGCTAATGGCGCTGTGTATGTTTACAAGAACGATAACGACAATGGGGGATTGTCGGCGTCGACAAATCAGTCGATTCGCAATGTACGCACGCAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGATGGGACGATGATGTTAATGGGTCTCGCCAATGGGTGCCGGAATGGGCGGCGGTTTCAAATCCTTGTGATATTGCCGGAATCTGTGGAAATGGGATTTGCTATTTGGATAGAAGTAAGACGAACGCGACTTGTTCTTGCTTGCCGGGGACTTTTAAGGACGCCGGTGGTAGCCAGTGCTTTGAGAATTCATCGTCGGTGGGTAAATGTGATGGCCAACATCATCAATCTCCGGCGACCCAGTTCAGGATTTCTCCAGTTCAGCAAACAAATTACTATTACTCTGAGTTCTCTGTTATTGCAAATTACAGTGATATCGACACTGTTGCCAAATGTGGCGATGCTTGCTTGTCTAATTGTGAGTGTGTTGCCTCTGTTTATGGGCTTGATGAAGAGAAACCTTATTGTTGGGTGTTGAGAAGCTTAGATTTTGGTGGGTTTGAGGATGCTGGTTCGACTCTGTTTGTGAAGGTTAGGTCCAATGGATCAATACCAGATGCCAATGGGCCAAGAACTGATGGAGATTCTTCAGGAAGTGCTAAACAAAAGGCTACAATTATTCCTATTGTTTTGAGTATGGCTTTTCTGATTGGGTTGCTGTGTTTGTTGTTATATTATAATGTTCATAGAAGAAAGGTTTTAAAGAGAGCCATGGAGAGCTCTCTGATCTTGTCTGGAGCTCCTATGAGCTTCACACACCGCGATTTGCAGATCCGAACGAACAATTTCTCCGAGCTTCTTGGAACAGGTGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTGGTAGCTGTGAAGAAACTTGACAGAGTTTTCCCTCATGGAGAGAAGGAGTTTATAACTGAAGTTAACACTATTGGATCTATGCATCACATGAACCTGGTTCGCCTCTGCGGATACTGCTCGGAAGGGTCGCATAGGTCAACTTTCCTATCCTATATTGCATTACAATCTTGGTTCAATCATTGTTGTTCATATCAAGTGCACATTGCATTTTGCAGGCTTCTGGTGTATGAATTCATGAAAAATGGGTCTGTGGACAAATGGATATTTCCTTCACATCATAACCAAGACAGGATTTTAGATTGGTCGACTCGGTTTCACGTAGCCATCGGCACGGCGCAAGGGATCGCTTATTTTCATGAACAATGCAGAAACAGGATCATACATTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAACTTCTGCCCCAAAGTTTCGGACTTTGGTCTGGCTAAGCTGATGGGACGAGAGCACTCGCACGTCGTAACGATGGTGAGAGGGACGAGAGGGTATTTGGCTCCGGAGTGGGTTAGTAATCGCCCCATCACGGTTAAAGCTGATGTTTATAGCTATGGAATGCTTCTCTTGGAGATTGTTGGTGGTAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCTGGTTGGGCATACAAGGAGATGAAGAATGGAACTCATTTCAAAGTGGCAGATAGGCGGCTAGAGGGTGCAGTGGATGGAGAAGAGCTAATGAGAGCATTGAAAGTTGCATTTTGGTGCATACAAGATGAAGTTGTGATGCGACCGACGATGGGCGAGGTCGTGAGAATGTTGGAAGGATCGAGTGAGGTCGAGACGCCGCCAATGCCACAAACAGTGGTGGAGATGGTTGAAGAAGGCTTGGATCAAGTTTATAGAGCCATGAAAAGAGATATCAATCAGTCAAGTTCCTTCACCATTAATACCCAACCTTCTTCATCTTTGGCTACCTGCAGTCATTCCACAATCTCTCCAAGATAG 2697 46.24 MAVGASSSSRDGSWVMFALAVVWLIRACMASQIVIGARLVATDRERNTWVSDNSTFAFGFSPASSGAVDRFLLAIWFAKLPGDRTVVWSANRNSPVSKNAIVEFDATGNLVLLDGGATVWSSNTSGDGAEFAVMSESGNFILFNAERIPIWQSFSHPSDTLLPNQPLSVSLELTTSKSLSHGGYYALKMLQQRTTLKLALTFNLPENYAGLPESYSNYSYWSAPAISNVTGEVIAVLDEGGSFGVVYGDSANGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDRSKTNATCSCLPGTFKDAGGSQCFENSSSVGKCDGQHHQSPATQFRISPVQQTNYYYSEFSVIANYSDIDTVAKCGDACLSNCECVASVYGLDEEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSIPDANGPRTDGDSSGSAKQKATIIPIVLSMAFLIGLLCLLLYYNVHRRKVLKRAMESSLILSGAPMSFTHRDLQIRTNNFSELLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRSTFLSYIALQSWFNHCCSYQVHIAFCRLLVYEFMKNGSVDKWIFPSHHNQDRILDWSTRFHVAIGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMKNGTHFKVADRRLEGAVDGEELMRALKVAFWCIQDEVVMRPTMGEVVRMLEGSSEVETPPMPQTVVEMVEEGLDQVYRAMKRDINQSSSFTINTQPSSSLATCSHSTISPR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12550001 12553941 + CmoCh18G013170.1 Cmo18g01317 403090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01317 898 SMART serkin_6 538 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01317 898 Gene3D Transferase(Phosphotransferase) domain 1 641 856 - -
Cmo18g01317 898 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 159 IPR036426 -
Cmo18g01317 898 ProSiteProfiles Protein kinase domain profile. 538 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01317 898 PIRSF SRK 623 890 IPR024171 GO:0004674
Cmo18g01317 898 PIRSF SRK 9 619 IPR024171 GO:0004674
Cmo18g01317 898 Pfam Protein kinase domain 541 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01317 898 ProSiteProfiles Bulb-type lectin domain profile. 40 155 IPR001480 -
Cmo18g01317 898 SUPERFAMILY Protein kinase-like (PK-like) 518 838 IPR011009 -
Cmo18g01317 898 SMART blect_4 40 157 IPR001480 -
Cmo18g01317 898 Pfam S-locus glycoprotein domain 273 347 IPR000858 GO:0048544
Cmo18g01317 898 Gene3D - 41 156 IPR036426 -
Cmo18g01317 898 Gene3D Phosphorylase Kinase; domain 1 503 613 - -
Cmo18g01317 898 ProSitePatterns Protein kinases ATP-binding region signature. 544 567 IPR017441 GO:0005524
Cmo18g01317 898 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 17 610 - -
Cmo18g01317 898 CDD B_lectin 47 157 IPR001480 -
Cmo18g01317 898 MobiDBLite consensus disorder prediction 876 898 - -
Cmo18g01317 898 PANTHER OS07G0415500 PROTEIN 17 610 - -
Cmo18g01317 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Cmo18g01317 898 PANTHER OS07G0415500 PROTEIN 624 898 - -
Cmo18g01317 898 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 624 898 - -
Cmo18g01317 898 Pfam D-mannose binding lectin 85 175 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01317 - - - bhj:120087538 1571.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00467 Cmo-Chr9:2091717 Cmo18g01317 Cmo-Chr18:12550001 4.96E-139 dispersed
Cmo15g00566 Cmo-Chr15:2699048 Cmo18g01317 Cmo-Chr18:12550001 3.24E-142 dispersed
Cmo18g01317 Cmo-Chr18:12550001 Cmo19g00983 Cmo-Chr19:8830134 4.55E-137 dispersed
Cmo18g01317 Cmo-Chr18:12550001 Cmo12g00289 Cmo-Chr12:1832935 3.31E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g816 . . . . . . . . . Cmo18g01317 . . . . . . . Bhi01g01427 . . . . . . . . . . . . . . . . . . . . Cme06g01057 . . . . . . . . . . . . Cma18g01288 . Car18g01206 . . . . . . . . . Cla05g00933 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75091 PF00069 Pkinase 1.90E-40 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01317 Cmo_Chr18 FPKM 1.126157 1.217878 1.828129 1.528286 10.417558 9.687077 9.675739 0.0 0.0 0.098393