Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01319 ATGTCTCAGGTGGTGGCTACGAGGTCGATTCACAGCACAGTCCCGTGCCATGGCTCGGGATCTGTGCTGGACCGGGTGAACAGAGCTCGGTCTTTTGGTATTGGATCCAAAGTGTTGGCGCATGAGAAGAAGAAAAGGAATTTTGTTTGCAGGAGAAGTCTAATCACAGCCAAGAGAGCTGCTCAAGTTGAAGTTGTTCCGGTATCACCTGAGGATATTCAGAAGGCAGATGAGCAATTTGAACATTTACGAGCAGTTCAACAACTCGGTGATACACCGGTCGGAATGTGGTCCAAACCAACAGTTAGACGTAAGACAAAAATCGTGTGCACAATTGGACCTTCAACTAACACAAAGGAAATGATTTGGAAGCTGGCTGAGGCTGGAATGAACGTTGCCCGATTGAATATGTCTCATGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGTCAGAGAATACAATGCCCAATGTAAGGACAACTGCATTGCAATCATGCTCGATACCAAGGCAAGTTCATTTTCACATTTTTCCACGTTCACCACCTTCGATCGATTAAACTGGCAACAAACGGTCCTGAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAAGTGGACAGGAATTCACTTTTACCATACGGAGAGGTGTTAGCACTGCAGACTCTGTTAGCGTGAACTATGATGATTTTGTTAATGATGTAGAAGTTGGGGACATCCTTCTTGTTGATGGTGGAATGATGTCGTTCATGGTGAAGTCTAAGACAGAGGATTCTGTTAAGTGTGAAGTTATTGATGGTGGAGAGCTCAAGTCCAGGCGACATTTAAATGTTCGAGGGAAAAGTGCTACACTGCCTTCCATTACTGAGAAGGACTGGGATGACATAAAATTTGGAGTTGACAACAAAGTTGACTTTTATGCTGTCTCGTTTGTTAAAGATGCACAAGTAGTTCATGAGTTGAAAAAATATCTTAAAAGCTGTGATGCTGATATTCATGTCATTGTAAAAATAGAAAGTGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCAAGAGGCGATCTCGGTGCAGAACTCCCTATTGAAGAAGTTCCACTTCTGCAGGAGGAGATAATCAACTTGTGTCGAGGCATGGGGAAGGCTGTCATTGTTGCAACTAACATGCTTGAGAGTATGATTGTACATCCGACACCAACCAGAGCAGAAGTATCTGATATTGCTATTGCAGTTAGAGAGGGGGCCGATGCAATCATGCTCTCTGGAGAAACAGCTCATGGAAAATTCCCCTTAAAAGCTGTGAAAGTAATGCATACAGTTGCTTTACGGACTGAAGCAACCATAGAAGGTGGTCGAATGCCATTGAATCTCGGTCAAACATTCAAGAACCATATGAGTGAAATGTTTGCTTATCATGCAACAATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAAAACTGGTTTCATGGCCATCCTTCTAAGCCATTACCGACCATCTGGGACAACATTTGCTTTTACAAATGATAAAAGGATACAACAGAGGTTGGCTTTATATCAGGGAGTGTGCCCCATATACATGCAGTTCTCTGATGATGCTGAGCAGACCTTTGCTGATGCCTTATCTCTGCTACAGAGGCAAGGAATGGTAAAGGAAGGAGAAGAGGTGGCACTCCTTCAGAGTGGCAGACAACCCATATGGCGGTTCCCATCTACTCACAACATTCAAGTCCGTAAAGTGTAG 1779 43.4 MSQVVATRSIHSTVPCHGSGSVLDRVNRARSFGIGSKVLAHEKKKRNFVCRRSLITAKRAAQVEVVPVSPEDIQKADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVREYNAQCKDNCIAIMLDTKASSFSHFSTFTTFDRLNWQQTVLRSGDLPQPILLESGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDILLVDGGMMSFMVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTKTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPIYMQFSDDAEQTFADALSLLQRQGMVKEGEEVALLQSGRQPIWRFPSTHNIQVRKV 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12557293 12563402 + CmoCh18G013190.1 Cmo18g01319 403092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01319 592 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 95 457 IPR015813 GO:0003824
Cmo18g01319 592 PANTHER PYRUVATE KINASE 35 592 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PANTHER PLASTIDIAL PYRUVATE KINASE 2 35 592 - -
Cmo18g01319 592 SUPERFAMILY PK beta-barrel domain-like 195 283 IPR011037 -
Cmo18g01319 592 TIGRFAM pyruv_kin: pyruvate kinase 200 589 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 Pfam Pyruvate kinase, alpha/beta domain 480 572 IPR015795 -
Cmo18g01319 592 Gene3D - 465 592 IPR036918 -
Cmo18g01319 592 ProSitePatterns Pyruvate kinase active site signature. 333 345 IPR018209 GO:0004743|GO:0006096
Cmo18g01319 592 SUPERFAMILY PK C-terminal domain-like 441 592 IPR036918 -
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 162 178 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 387 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 362 386 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 305 319 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 335 361 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 431 447 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 PRINTS Pyruvate kinase family signature 412 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 Pfam Pyruvate kinase, barrel domain 104 458 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmo18g01319 592 Gene3D - 104 451 IPR040442 -
Cmo18g01319 592 Gene3D - 193 286 IPR015806 GO:0004743|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01319 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101206887 1041.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00089 Cmo18g01319 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01639 Cmo-Chr2:9445282 Cmo18g01319 Cmo-Chr18:12557293 0 dispersed
Cmo18g01319 Cmo-Chr18:12557293 Cmo19g00460 Cmo-Chr19:5546173 0 dispersed
Cmo16g00089 Cmo-Chr16:408675 Cmo18g01319 Cmo-Chr18:12557293 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01319 Cmo_Chr18 FPKM 1.054545 0.0 1.435912 0.909905 2.832804 3.50781 3.412831 0.0 0.0 0.0