Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01320 ATGAGGGGAATGGAGGACTTATGGGGTGTGTTCTGTGGAGGACATGACTGTTCAAGTGGTAGTGAGAAACCTTGTGGCTTTCTTTCTGATTCCTCTTCATGTAATACTCAAGCCTTGTTCGTCTGTTTTGATTTTCTACTGTTGATCTTGCTTGTTTCCAATATTGTGGGGAAGTCAGTGAAAAGATCTCACATGTCGAATCGAATTCGAAGTCGTTCTGCTTTGCAGATTTTGTCTGCTATCTTCAATGGTTGTGTTGGATTAGTGTACCTTGGCTTGGGAATTTGGATTCTGGTGGAGAAATTGAGTAAAGATCATACTGCTTTGCCTTTGCAGCTGTGGTTATCTGCCACCGTCCATGGCTTCACATGGTTATTGGTGAGCTCCGTTATTAGCTTCTGGTGTAAACAGTTTCCAAGAGCCTTGTTGCGCTTATTGTCCATTGCAGCATTCGTGTTTACTGGAGTTATTTGTGTTCTATCACTTTTCGATGCTGTTTCGAACAGAACAGCATCGGCAAAGATGATTTTAGATGTTGTATCTGTTCCAGGATCAGTTCTGTTATTGATTTGCGCTTTTGGGTGTTTTTCCCGTGACGAGAGCGAGACGAGTATCAATGGGAATGGACTTTACACCCCACTAAATGGTGAGGCCAATGAAAGTGATAAGGTTGATCTTGTTACTCCATTAGCTAAATCTGGATTGTGGAGTAAATTTTCGTTTTGGTGGATGAATCCTTTAATGAAAAAGGGGAAGGAAAAGACTCTGGACTACGACGATATACCGATGATGTGCGAAGAAGATCGTGCAGAAAGTTGCTACTTGCAGTTCACAAACAAAATGAACGAGCTGAAAAAGAAAGAACCAAATTCCCAACCATCAGTCTTAAGAGTCATCGTTTTATGCCATTGGAAGGACATATTATTGTCTGGTTTTTTCGCTTTGTTGAAGATACTCTTTCTGTCTGCTGGTCCTCTGCTTCTAAATTCCTTTATCTTAGTTGCTCAAGGACATCAAAGCTTCAAATACGAAGGTCTTGTGCTTGCCCTTTCACTTTTCTTCTCGAAAAGCATCGAATCCATATCACAAAGGCAATGGTACTTCAGAAGCAGGCTTGTTGGTCTAAAAGTCAGGTCTATGCTTTCAGCAGCCATTTATAAGAAGCAATTGAGATTGTCCAATGAAGCTAAGTTGACGCACTCGAGCGGTGAAATCATGAACTATGTGACCGTGGACGCATACAGGATTGGAGAGTTTTCATATTGGTTCCACCAAACTTGGACCACGAGTCTTCAGCTCATTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATTGCCTCCTTTTTGGTAATAATTCTATGTGTAATTGGCAACACTCCAATTGCCAAGCTACTGCATAAGTATCAGAGTAAATTGATGGCTGCACAAGACGAGCGACTGAAAACGTTCACCGAGGCTCTCGTGAACATGAAGGTTTTGAAGTTATATGCTTGGGAATCCCATTTCAGGAATGTAATTGCGAAGTTAAGAGAAGTGGAGCACAAGTGGTTGTCATCTGTGCAAATTCGAAAAGGATACAATGGTATTCTCTTTTGGTCATCTCCTGTTATTGTATCTGTTGCAACCTTTGGGGCTTGTAGCCTTTTGGACATTCCGCTACATGCCAATAATGTTTTCACCTTTGTGTCTACGCTGCGCCTTGTTCAAGATCCTGTTAGATCTATGGCTGATGTCATTGCAGCGATTATTCAAGCACGGGTTTCATTTACGCGTATCATTAACTTTCTGGAGGCACCAGAGCTGCAAGGTACAAGTGTTTGTAGAAAGCGCCTTAACACGAATGATAACTACTCCATTAAGATCAGTTCAGCATCTTTCTCATGGGAAAAGAACTCCTCGAAGCCGACTCTTCGTAATATAAATCTCGAGGTCAGATCAGGTTCGAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCATTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAGGCTTGCCTATGTGTCTCAAATAGCATGGATCCAAACAGGAACCATACGAGACAACATCTTATTTGGCTCTCAAATGGACAGCTGGAGGTATCGAGAAACGCTCGAGAAGTGTTCGTTGGTGAAGGACCTCGAGTTGCTTCCTTATGGTGACCTCACTGAGATTGGGGAGAGAGGAGTGAATCTCAGTGGTGGCCAAAAGCAAAGGATTCAACTCGCACGTGCGCTGTATCAAGATGCTGATATATATCTTTTGGATGATCCGTTTAGTGCTGTGGATGCACATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCTCTCTCGGGTAAAACGGTTCTTCTCGTGACTCATCAAGTCGATTTTCTGCCTGATTTTGATTCTGTCCTGCTAATGTCGGACGGGGAAATTCAAGAAGCAGCCCCTTATCATCATTTGTTGGCACATAGCAAAGAGTTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGTACTGAAAGGCTTGCAGATTTTTCTGCCACCAAGAGTTTGATAACATCAAGTAAAGAGATTAAGAAATCTTATACAGAGAAACTGTCCGTAACATCTGATGCTAATCAGTTAATTAAGCAGGAGGAGCGAGAAGTCGGTGACTCGGGATTCAGGCCTTATATTCAGTATCTGAATCAGAGCAAAGGGTTCATCTTCTTCTCCTTAGATGTTCTCTCCCAACTAGCATTTGTGGCATGTGGAATAATGCAAAACTCTTGGATGGCTTCGAATGTCGACAATCCCGATATCAGCAACTCCCGCTTGATCCTCGTTTACTTGTTGATTGGAATTATTTCAACATTCTTCTTGGTTACTAGATCTCTTTTCACAGCTCTTTTAGGTTTGGAATCATCAAAATCATTATTTTCTCAGCTACTAACATCTCTTTTTCGCGCACCGATGTCCTTCTATGACTCCACACCTATTGGAAGGATACTTAGTCGAGTCTCAATGGATCTTAGTATTGTAGATCTTGATGTCCCATTCAGTTTAATATTTGCTGTTGGTGCAACCTCCAATGCCTATGCTGCTCTCGGCGTTTTAGCTGTAATCACGTGGCAAGTCCTATTCATCTCCATACCCACAGTTGTTTTGGCGATTTGCTTGCAGAGATACTACTTTGCATCTGCTAAAGAACTCATGCGTCTTAACGGGACAACGAAGTCGATGGTAGCAAATCATTTGTCCGAATCCGTAGCTGGATCAATGACAATACGAGCTTTCGAAGAGGAAGAGCGATTCTTTAAGAAAAACCTTGAATTCGTTGATGGAAATGCCAGTCCTTTCTTTCACAACTTTTCGGCCAACGAGTGGCTGATACAGCGGTTGGAAATGCTCAGCGCGGTCGTCCTTGCCTCCGCTGCGTTGTGCATGGTGTTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCAATCTCTTATGGCCTTTCTTTAAATGTGTCCTTGGTCTTCTCCATCCAGAATCAATGTACTATAGCTAATCACATCATTTCTGTGGAAAGATTAAACCAATACATGCACTTACCGAGCGAAGCTCCGGAAATCATCGAAGAGAGACGTCCCCCAACCAACTGGCCCTCTGTTGGCAAAGTCGAGATAATTGACTTGAAGATACGATACCGACCCAATACACCCCTTGTTCTTCATGGTATAAGCTGCACATTTGAAGGAGGACATAAGATTGGCATTGTTGGGCGGACTGGCAGTGGAAAGTCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCGGGAGGAAAAATTTTAGTTGATGGTATCGACATTTGCTCGATCGGACTTCATGACCTGCGGTCACGTTTCGGGATTATACCTCAAGATCCAACCCTTTTTAAAGGGACTGTTAGATACAATTTGGATCCTTTAGTTCAGCATACTGATGATGAAATATGGGAGGTACTTGGAAAGTGTCAACTTAGAGAGGCTGTTGAAGAGAAAGAAGCTGGTTTGGATTCCTTGGTTGTGGAAGATGGTTCGAACTGGAGCATGGGGCAGCGCCAACTTTTCTGTTTAGGCCGTGCGCTGTTGAGAAGAAGTAGAATATTGGTGCTCGATGAGGCAACTGCGTCGATCGACAATGCAACGGATATGATTCTGCAGAAGACGATTCGAACTGAATTCGCAGACTGTACGGTGATTACAGTTGCTCACAGAATACCAACTGTTATGGACTGCACCATGGTGCTTGCTATAAGTGACGGGAGAATAGCAGAATACGACGAACCGACCACGTTGATCAAGAGAGAAGGCTCTCTATTTGGACAGCTTGTGAAAGAATATTGGTCTCACTCACCATCTGCAGAATGA 4431 43.02 MRGMEDLWGVFCGGHDCSSGSEKPCGFLSDSSSCNTQALFVCFDFLLLILLVSNIVGKSVKRSHMSNRIRSRSALQILSAIFNGCVGLVYLGLGIWILVEKLSKDHTALPLQLWLSATVHGFTWLLVSSVISFWCKQFPRALLRLLSIAAFVFTGVICVLSLFDAVSNRTASAKMILDVVSVPGSVLLLICAFGCFSRDESETSINGNGLYTPLNGEANESDKVDLVTPLAKSGLWSKFSFWWMNPLMKKGKEKTLDYDDIPMMCEEDRAESCYLQFTNKMNELKKKEPNSQPSVLRVIVLCHWKDILLSGFFALLKILFLSAGPLLLNSFILVAQGHQSFKYEGLVLALSLFFSKSIESISQRQWYFRSRLVGLKVRSMLSAAIYKKQLRLSNEAKLTHSSGEIMNYVTVDAYRIGEFSYWFHQTWTTSLQLIIALLILYKAVGIATIASFLVIILCVIGNTPIAKLLHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWESHFRNVIAKLREVEHKWLSSVQIRKGYNGILFWSSPVIVSVATFGACSLLDIPLHANNVFTFVSTLRLVQDPVRSMADVIAAIIQARVSFTRIINFLEAPELQGTSVCRKRLNTNDNYSIKISSASFSWEKNSSKPTLRNINLEVRSGSKVAICGEVGSGKSTLLAAILGEIPNVEGNIQVYGRLAYVSQIAWIQTGTIRDNILFGSQMDSWRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNGYVMEALSGKTVLLVTHQVDFLPDFDSVLLMSDGEIQEAAPYHHLLAHSKEFQDLVNAHKETAGTERLADFSATKSLITSSKEIKKSYTEKLSVTSDANQLIKQEEREVGDSGFRPYIQYLNQSKGFIFFSLDVLSQLAFVACGIMQNSWMASNVDNPDISNSRLILVYLLIGIISTFFLVTRSLFTALLGLESSKSLFSQLLTSLFRAPMSFYDSTPIGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTVVLAICLQRYYFASAKELMRLNGTTKSMVANHLSESVAGSMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAALCMVLLPTGSFSPGFIGMAISYGLSLNVSLVFSIQNQCTIANHIISVERLNQYMHLPSEAPEIIEERRPPTNWPSVGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHTDDEIWEVLGKCQLREAVEEKEAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAE 1476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12565352 12572185 - CmoCh18G013200.1 Cmo18g01320 403093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01320 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo18g01320 1476 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Cmo18g01320 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1466 IPR003439 GO:0005524
Cmo18g01320 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1459 IPR027417 -
Cmo18g01320 1476 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 68 1476 - -
Cmo18g01320 1476 SMART AAA_5 650 823 IPR003593 -
Cmo18g01320 1476 SMART AAA_5 1258 1450 IPR003593 -
Cmo18g01320 1476 Gene3D - 602 866 IPR027417 -
Cmo18g01320 1476 CDD ABCC_MRP_domain1 623 823 - -
Cmo18g01320 1476 Pfam ABC transporter transmembrane region 308 575 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo18g01320 1476 Pfam ABC transporter transmembrane region 916 1175 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo18g01320 1476 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Cmo18g01320 1476 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1195 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo18g01320 1476 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 68 1476 - -
Cmo18g01320 1476 CDD ABCC_MRP_domain2 1230 1450 - -
Cmo18g01320 1476 SUPERFAMILY ABC transporter transmembrane region 296 601 IPR036640 GO:0005524|GO:0016021
Cmo18g01320 1476 Gene3D - 1215 1467 IPR027417 -
Cmo18g01320 1476 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Cmo18g01320 1476 Pfam ABC transporter 1249 1397 IPR003439 GO:0005524
Cmo18g01320 1476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 846 IPR003439 GO:0005524
Cmo18g01320 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 846 IPR027417 -
Cmo18g01320 1476 SUPERFAMILY ABC transporter transmembrane region 923 1212 IPR036640 GO:0005524|GO:0016021
Cmo18g01320 1476 Gene3D ABC transporter type 1, transmembrane domain 276 601 IPR036640 GO:0005524|GO:0016021
Cmo18g01320 1476 Gene3D ABC transporter type 1, transmembrane domain 881 1213 IPR036640 GO:0005524|GO:0016021
Cmo18g01320 1476 CDD ABC_6TM_ABCC_D2 914 1207 IPR044726 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01320 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2490.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00086 Cmo18g01320 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01323 Cmo-Chr17:10387653 Cmo18g01320 Cmo-Chr18:12565352 0 dispersed
Cmo08g00731 Cmo-Chr8:4607834 Cmo18g01320 Cmo-Chr18:12565352 0 transposed
Cmo16g00086 Cmo-Chr16:397796 Cmo18g01320 Cmo-Chr18:12565352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01320 Cmo_Chr18 FPKM 3.618636 3.847086 5.588928 5.798086 7.977666 7.093963 7.832404 5.290251 4.663485 5.550048