Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01322 ATGATGAAGAATTGCTTCATCCTCCTTGAAATTATGTTGTTTATAGCGATAATCTTACCAGGGGCTCTCACTGAGCCAGTTGAAGACAAGCAAGCATTGCTTGATTTCTTCCATAATATCCCTCACTCGCCTTCTCTCAATTGGAATGAGAGTAGTTCTGTGTGCAGAGGCTGGGCAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTAGTAGCCATTCGATTACCGGCGACCGGTCTGCTCGGTCCGATTCCTGTCAATACTCTTAGCCGCCTATCTGCACTTGAGACTCTAAGCCTTAGATTAAATAGGATATCAGGGCCTTTCCCTTCTGATCTTTCCCAGCTGGAAAACTTGAGTTCCTTATATTTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTGGACTTTTCAGTTTGGAGGAACCTTAGTGTCCTTGATCTATCTAACAATCTCTTTAATGGGAGTATTCCTTCTTCAATCTCAAACTTGACCCATCTGACTGTTCTGAATCTTGCAAACAACTCGTTGTCGGGTGAATTTCCCGACCTTGATATTCCGAGTTTGCAATGGTTAGATTTGTCTAACAATAGTCTTACAGGAAATGTGCCTCATTCTCTTACAAGATTTCCAAGTTGGGTGTTCTCCAATAACAATATTACTGTAGAACACGGTGCAATTCCCCCGTCTTTTCCGCTTCAGCCTCCCGGTTCTCGACCGACACGAAAAGGAAAAGGACTAAATGAATCTGCAATATTGGGTGTTGCAATTGGTGGTTCTGTTGTTGGATTAATTTTGGTAGCAGTTTTGTTGACTGCTTGCTGGTTGAAAAGGGGAAAAGAAAATGGTAGTTCCACTATGGAGTCCAAAAAGAAGGAAACATCTGTGAACAAAAGGGGATTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTCATGGATTCTAATCTCGCATTTGATTTGGAAGACCTGTTGAGAGCGTCTGCCGAGGTTCTCGGGAAGGGAACCTTCGGAGTGAGCTACAAGGCAACGTTGGAGGACTCGACGATTGTGGTAGTGAAGAGGCTGAATCAAGTGACGGTTGGAAAACGAGAATTCGAACAGCAGATGGAGTTAATTGGAAACATTAAGCACGAGCACGTCGTTTCGCTAAGAGCATACTATTATTCAAAGGACGAGAAGCTTATGGTCTATGATTACTACGGACAAGGGAGTGTTTCTGCAATGTTACACAGTAAAGAAGGAAATGGTTTACCGTTATTAGATTGGGATAGTCGGATGAAAATTGCGATCGGAACGGCTCGAGGTCTTGCTCATATTCACACAGAAAACGGTGGAAAATGTTCACATGGAAACGTGCGAGCCTCAAACATTTTCCTAAACTCTAAAGGGTATGGCTGTGTATCTGATGTTGGTTTGTCTGTGTTGATGAATTCTATTCCGGTACCAGCCACGAGAACGGTTGGATACCGAGCCCCTGAGGTGACCGACACTCGGAGAGCATCAGAAGCAGCGGATGTGTACAGTTTCGGGGTAGTGCTGCTGGAACTCCTGACTGGAAAGTGTCCCATACATGTTGAAGGTGGTAATGAAGTGGTTAACTTGGTGAGGTGGGTGAAGTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTGGAGCTTCTGAGGTATCCAAATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGGAGAGGCCGAAGATGATGGATATCGTGTCGAAAATCGAGCAAGTTTGGCGAATGAGCACCGGAACGGGACAATCATCTGGATCAAGATCGGCTCATTCTACTCCAGTTCGTGTAATGGAAATCGAAAACGGTTGTATAAATTTCATTCCGCACCAAATCACAAAGTGTTGTTTTCCTTTTCCTTCCTCGTTTCTCATCCTCATCCTTCTCTTCGTCTTCTCCACAAACCCTCACACCAGACCAGACCTAACACAAGCCCTTCACGTGGGCCTCTCTCTGATTTTGTTGATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCTCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACAAAGGTCTTTCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATCTTGAAAGAGCAGTGGAGTCCTGCCCTAACTATTTCCAAGGTCTTGCTTTCAATCTGTTCCCTGTTGACGGACCCAAATCCAGATGACCCGCTTGTGCCCGAGATCGCTCACATGTACAAGACTGACAGGAACAAATACGAGACGACTGCTAGGAGCTGGACGCAGAAGCCTGTCGTCCTCATTTTTATGCTCACCTGCTTGTTCTATATATGA 2514 44.95 MMKNCFILLEIMLFIAIILPGALTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCRGWAGVFCNSDESRVVAIRLPATGLLGPIPVNTLSRLSALETLSLRLNRISGPFPSDLSQLENLSSLYLQYNEFSGPLPLDFSVWRNLSVLDLSNNLFNGSIPSSISNLTHLTVLNLANNSLSGEFPDLDIPSLQWLDLSNNSLTGNVPHSLTRFPSWVFSNNNITVEHGAIPPSFPLQPPGSRPTRKGKGLNESAILGVAIGGSVVGLILVAVLLTACWLKRGKENGSSTMESKKKETSVNKRGFESQEQKNNLNFFMDSNLAFDLEDLLRASAEVLGKGTFGVSYKATLEDSTIVVVKRLNQVTVGKREFEQQMELIGNIKHEHVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHSKEGNGLPLLDWDSRMKIAIGTARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLSVLMNSIPVPATRTVGYRAPEVTDTRRASEAADVYSFGVVLLELLTGKCPIHVEGGNEVVNLVRWVKSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEERPKMMDIVSKIEQVWRMSTGTGQSSGSRSAHSTPVRVMEIENGCINFIPHQITKCCFPFPSSFLILILLFVFSTNPHTRPDLTQALHVGLSLILLMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKPVVLIFMLTCLFYI 837
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 12578033 12584583 + CmoCh18G013220.1 Cmo18g01322 403095
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01322 837 MobiDBLite consensus disorder prediction 283 300 - -
Cmo18g01322 837 MobiDBLite consensus disorder prediction 226 245 - -
Cmo18g01322 837 Pfam Ubiquitin-conjugating enzyme 684 820 IPR000608 -
Cmo18g01322 837 MobiDBLite consensus disorder prediction 281 301 - -
Cmo18g01322 837 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Cmo18g01322 837 Gene3D Ribonuclease Inhibitor 27 235 IPR032675 -
Cmo18g01322 837 SUPERFAMILY UBC-like 678 826 IPR016135 -
Cmo18g01322 837 Gene3D Ubiquitin Conjugating Enzyme 677 823 IPR016135 -
Cmo18g01322 837 Pfam Protein tyrosine and serine/threonine kinase 331 594 IPR001245 GO:0004672|GO:0006468
Cmo18g01322 837 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 680 826 IPR000608 -
Cmo18g01322 837 SMART ubc_7 683 826 - -
Cmo18g01322 837 PANTHER OS05G0588300 PROTEIN 15 623 - -
Cmo18g01322 837 ProSiteProfiles Protein kinase domain profile. 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g01322 837 SUPERFAMILY Protein kinase-like (PK-like) 331 594 IPR011009 -
Cmo18g01322 837 CDD UBCc 682 821 IPR000608 -
Cmo18g01322 837 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cmo18g01322 837 PANTHER LRR RECEPTOR-LIKE KINASE 15 623 - -
Cmo18g01322 837 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Cmo18g01322 837 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 753 768 IPR023313 -
Cmo18g01322 837 SUPERFAMILY L domain-like 38 221 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01322 Cmo-Chr18:12578033 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo14g02145 Cmo-Chr14:15451325 Cmo18g01322 Cmo-Chr18:12578033 2.98E-98 wgd
Cmo15g01332 Cmo-Chr15:9137087 Cmo18g01322 Cmo-Chr18:12578033 0 wgd
Cmo16g00084 Cmo-Chr16:387197 Cmo18g01322 Cmo-Chr18:12578033 0 wgd
Cmo18g01322 Cmo-Chr18:12578033 Cmo02g01122 Cmo-Chr2:6813662 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75092 PF07714 PK_Tyr_Ser-Thr 5.10E-33 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01322 - - csv:101207123 1048.88