Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01322 | ATGATGAAGAATTGCTTCATCCTCCTTGAAATTATGTTGTTTATAGCGATAATCTTACCAGGGGCTCTCACTGAGCCAGTTGAAGACAAGCAAGCATTGCTTGATTTCTTCCATAATATCCCTCACTCGCCTTCTCTCAATTGGAATGAGAGTAGTTCTGTGTGCAGAGGCTGGGCAGGAGTGTTTTGCAACTCTGATGAGTCTAGAGTAGTAGCCATTCGATTACCGGCGACCGGTCTGCTCGGTCCGATTCCTGTCAATACTCTTAGCCGCCTATCTGCACTTGAGACTCTAAGCCTTAGATTAAATAGGATATCAGGGCCTTTCCCTTCTGATCTTTCCCAGCTGGAAAACTTGAGTTCCTTATATTTGCAATACAACGAGTTTTCTGGTCCTTTGCCTTTGGACTTTTCAGTTTGGAGGAACCTTAGTGTCCTTGATCTATCTAACAATCTCTTTAATGGGAGTATTCCTTCTTCAATCTCAAACTTGACCCATCTGACTGTTCTGAATCTTGCAAACAACTCGTTGTCGGGTGAATTTCCCGACCTTGATATTCCGAGTTTGCAATGGTTAGATTTGTCTAACAATAGTCTTACAGGAAATGTGCCTCATTCTCTTACAAGATTTCCAAGTTGGGTGTTCTCCAATAACAATATTACTGTAGAACACGGTGCAATTCCCCCGTCTTTTCCGCTTCAGCCTCCCGGTTCTCGACCGACACGAAAAGGAAAAGGACTAAATGAATCTGCAATATTGGGTGTTGCAATTGGTGGTTCTGTTGTTGGATTAATTTTGGTAGCAGTTTTGTTGACTGCTTGCTGGTTGAAAAGGGGAAAAGAAAATGGTAGTTCCACTATGGAGTCCAAAAAGAAGGAAACATCTGTGAACAAAAGGGGATTTGAGAGCCAAGAACAAAAGAACAACCTTAATTTCTTCATGGATTCTAATCTCGCATTTGATTTGGAAGACCTGTTGAGAGCGTCTGCCGAGGTTCTCGGGAAGGGAACCTTCGGAGTGAGCTACAAGGCAACGTTGGAGGACTCGACGATTGTGGTAGTGAAGAGGCTGAATCAAGTGACGGTTGGAAAACGAGAATTCGAACAGCAGATGGAGTTAATTGGAAACATTAAGCACGAGCACGTCGTTTCGCTAAGAGCATACTATTATTCAAAGGACGAGAAGCTTATGGTCTATGATTACTACGGACAAGGGAGTGTTTCTGCAATGTTACACAGTAAAGAAGGAAATGGTTTACCGTTATTAGATTGGGATAGTCGGATGAAAATTGCGATCGGAACGGCTCGAGGTCTTGCTCATATTCACACAGAAAACGGTGGAAAATGTTCACATGGAAACGTGCGAGCCTCAAACATTTTCCTAAACTCTAAAGGGTATGGCTGTGTATCTGATGTTGGTTTGTCTGTGTTGATGAATTCTATTCCGGTACCAGCCACGAGAACGGTTGGATACCGAGCCCCTGAGGTGACCGACACTCGGAGAGCATCAGAAGCAGCGGATGTGTACAGTTTCGGGGTAGTGCTGCTGGAACTCCTGACTGGAAAGTGTCCCATACATGTTGAAGGTGGTAATGAAGTGGTTAACTTGGTGAGGTGGGTGAAGTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTGGAGCTTCTGAGGTATCCAAATATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGGAGAGGCCGAAGATGATGGATATCGTGTCGAAAATCGAGCAAGTTTGGCGAATGAGCACCGGAACGGGACAATCATCTGGATCAAGATCGGCTCATTCTACTCCAGTTCGTGTAATGGAAATCGAAAACGGTTGTATAAATTTCATTCCGCACCAAATCACAAAGTGTTGTTTTCCTTTTCCTTCCTCGTTTCTCATCCTCATCCTTCTCTTCGTCTTCTCCACAAACCCTCACACCAGACCAGACCTAACACAAGCCCTTCACGTGGGCCTCTCTCTGATTTTGTTGATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCTCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACAAAGGTCTTTCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATCTTGAAAGAGCAGTGGAGTCCTGCCCTAACTATTTCCAAGGTCTTGCTTTCAATCTGTTCCCTGTTGACGGACCCAAATCCAGATGACCCGCTTGTGCCCGAGATCGCTCACATGTACAAGACTGACAGGAACAAATACGAGACGACTGCTAGGAGCTGGACGCAGAAGCCTGTCGTCCTCATTTTTATGCTCACCTGCTTGTTCTATATATGA | 2514 | 44.95 | MMKNCFILLEIMLFIAIILPGALTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCRGWAGVFCNSDESRVVAIRLPATGLLGPIPVNTLSRLSALETLSLRLNRISGPFPSDLSQLENLSSLYLQYNEFSGPLPLDFSVWRNLSVLDLSNNLFNGSIPSSISNLTHLTVLNLANNSLSGEFPDLDIPSLQWLDLSNNSLTGNVPHSLTRFPSWVFSNNNITVEHGAIPPSFPLQPPGSRPTRKGKGLNESAILGVAIGGSVVGLILVAVLLTACWLKRGKENGSSTMESKKKETSVNKRGFESQEQKNNLNFFMDSNLAFDLEDLLRASAEVLGKGTFGVSYKATLEDSTIVVVKRLNQVTVGKREFEQQMELIGNIKHEHVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHSKEGNGLPLLDWDSRMKIAIGTARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLSVLMNSIPVPATRTVGYRAPEVTDTRRASEAADVYSFGVVLLELLTGKCPIHVEGGNEVVNLVRWVKSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEERPKMMDIVSKIEQVWRMSTGTGQSSGSRSAHSTPVRVMEIENGCINFIPHQITKCCFPFPSSFLILILLFVFSTNPHTRPDLTQALHVGLSLILLMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKPVVLIFMLTCLFYI | 837 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 12578033 | 12584583 | + | CmoCh18G013220.1 | Cmo18g01322 | 403095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01322 | 837 | MobiDBLite | consensus disorder prediction | 283 | 300 | - | - | |
Cmo18g01322 | 837 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
Cmo18g01322 | 837 | Pfam | Ubiquitin-conjugating enzyme | 684 | 820 | IPR000608 | - | |
Cmo18g01322 | 837 | MobiDBLite | consensus disorder prediction | 281 | 301 | - | - | |
Cmo18g01322 | 837 | Gene3D | Phosphorylase Kinase; domain 1 | 291 | 401 | - | - | |
Cmo18g01322 | 837 | Gene3D | Ribonuclease Inhibitor | 27 | 235 | IPR032675 | - | |
Cmo18g01322 | 837 | SUPERFAMILY | UBC-like | 678 | 826 | IPR016135 | - | |
Cmo18g01322 | 837 | Gene3D | Ubiquitin Conjugating Enzyme | 677 | 823 | IPR016135 | - | |
Cmo18g01322 | 837 | Pfam | Protein tyrosine and serine/threonine kinase | 331 | 594 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo18g01322 | 837 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 680 | 826 | IPR000608 | - | |
Cmo18g01322 | 837 | SMART | ubc_7 | 683 | 826 | - | - | |
Cmo18g01322 | 837 | PANTHER | OS05G0588300 PROTEIN | 15 | 623 | - | - | |
Cmo18g01322 | 837 | ProSiteProfiles | Protein kinase domain profile. | 327 | 600 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo18g01322 | 837 | SUPERFAMILY | Protein kinase-like (PK-like) | 331 | 594 | IPR011009 | - | |
Cmo18g01322 | 837 | CDD | UBCc | 682 | 821 | IPR000608 | - | |
Cmo18g01322 | 837 | Pfam | Leucine rich repeat N-terminal domain | 28 | 64 | IPR013210 | - | |
Cmo18g01322 | 837 | PANTHER | LRR RECEPTOR-LIKE KINASE | 15 | 623 | - | - | |
Cmo18g01322 | 837 | Gene3D | Transferase(Phosphotransferase) domain 1 | 403 | 614 | - | - | |
Cmo18g01322 | 837 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 753 | 768 | IPR023313 | - | |
Cmo18g01322 | 837 | SUPERFAMILY | L domain-like | 38 | 221 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo18g01322 | Cmo-Chr18:12578033 | Cmo20g00327 | Cmo-Chr20:1600161 | 0 | dispersed | |
Cmo14g02145 | Cmo-Chr14:15451325 | Cmo18g01322 | Cmo-Chr18:12578033 | 2.98E-98 | wgd | |
Cmo15g01332 | Cmo-Chr15:9137087 | Cmo18g01322 | Cmo-Chr18:12578033 | 0 | wgd | |
Cmo16g00084 | Cmo-Chr16:387197 | Cmo18g01322 | Cmo-Chr18:12578033 | 0 | wgd | |
Cmo18g01322 | Cmo-Chr18:12578033 | Cmo02g01122 | Cmo-Chr2:6813662 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75092 | PF07714 | PK_Tyr_Ser-Thr | 5.10E-33 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01322 | - | - | csv:101207123 | 1048.88 |