Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01328 ATGGTTGCTAGTTTAGCTCAATTTTGCCAACCAAATCAAGAATTTGTCGATAATACAACTCCCCATCTCCAAGGAGATGACCTCTTCAGTATCTTTGAGAGTTTGGAGAGTGTTGCCGAGTTCAGTATGATCGAGGACGATATCGAACCAACCAAAGACGGCGAGGAGACCACAAGCTTGGTTTTCTCCGAGACTGAGCTCGAGGCTTCGCCGAAAACAAAGCGATTGAAGACGACAACGACAACGACAATGGCAAAGGCTTCTCCCTTGGAGGAAGCAAACCCTGATGGAACTCAAAGAATTTCCCACATTACGGTGGAGCGCAACCGTAGGAAGCAAATGAACGAGCATTTGTCTATCTTGAGGACCCTCATGCCTTGCTTCTATGTCAAAAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAGGAGTTGCAACAAGTTCTTCAATCACTGGAGGCCAAGAGGCAAAGGAAAGTTTATAGTGAAGGGTTGAGCCCTAGGGTAGTTTCAAGTCCAAGGCCTAATTTACAAATGAGTCCAAGAAAACCACCACTAAGTCCTCGCCTTAACTTGCCAATTAGCCCAAGAACTCCACAACCCACTAGCCCTTACACCAAGCCTCCAAGGTTGCAACAACCTCCCACCACCGTGGCCGCCGCCACCGCAAGCAGCGGCTGCACCACCAATATGGCTAACAACAACAACTCATTAGAGCCATCCCCTTGTAATTCATCTTCAACCACATATTCCTCCATTGACAATGCTAACAATGCCAACAATGATCTTGTGGCCAATTCAAAATCAGCCATAGCTGAAGTTGAGGTGAAGTTCACAGGTCCAAATGTGGTTTTGAAGACAGTTTCTCCTCCAATTCCTGGGCAAGCTGTGAAGATCATTTCTGCACTTGAGCACCTCTCCCTTGAAATTCTCCATGTCAAGATCACCACACTTGATCAAACCATGATTAACTCTTTCACAATTAAGATTGGAATTGAATGCCAACTTAGTGCGGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA 1065 45.73 MVASLAQFCQPNQEFVDNTTPHLQGDDLFSIFESLESVAEFSMIEDDIEPTKDGEETTSLVFSETELEASPKTKRLKTTTTTTMAKASPLEEANPDGTQRISHITVERNRRKQMNEHLSILRTLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKRQRKVYSEGLSPRVVSSPRPNLQMSPRKPPLSPRLNLPISPRTPQPTSPYTKPPRLQQPPTTVAAATASSGCTTNMANNNNSLEPSPCNSSSTTYSSIDNANNANNDLVANSKSAIAEVEVKFTGPNVVLKTVSPPIPGQAVKIISALEHLSLEILHVKITTLDQTMINSFTIKIGIECQLSAEELAHQIQQTFC 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12635767 12637378 + CmoCh18G013280.1 Cmo18g01328 403101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01328 354 CDD bHLH_AtFAMA_like 101 174 - -
Cmo18g01328 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Cmo18g01328 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 173 IPR036638 GO:0046983
Cmo18g01328 354 Gene3D - 91 163 IPR036638 GO:0046983
Cmo18g01328 354 Coils Coil 142 162 - -
Cmo18g01328 354 SMART finulus 104 155 IPR011598 GO:0046983
Cmo18g01328 354 MobiDBLite consensus disorder prediction 161 253 - -
Cmo18g01328 354 PANTHER TRANSCRIPTION FACTOR FAMA 2 354 IPR044283 GO:0003700|GO:0010052
Cmo18g01328 354 MobiDBLite consensus disorder prediction 216 253 - -
Cmo18g01328 354 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Cmo18g01328 354 MobiDBLite consensus disorder prediction 182 215 - -
Cmo18g01328 354 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 2 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01328 Cmo-Chr18:12635767 Cmo06g01435 Cmo-Chr6:10398681 6.75E-28 dispersed
Cmo18g01328 Cmo-Chr18:12635767 Cmo19g00245 Cmo-Chr19:1723747 2.15E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11570 PF00010 HLH 4.40E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01328 K20558 - csv:101211617 497.664