Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01329 ATGGAGAACTTGGGGGAATGGGAGCGGAAGAATCTTCAAAATGAGCTGCTTAAAGGGAAGGAGTTTGCGAGGCAACTCCGAGTTCATCTCAATGTGAGACCTTCAACTTCATCCATGGCTGCTGCTTCTTCTTCTTCTTCGTATGATGGTGGAGAATTATTGGTTCAGAAGATTTTATCTTCATATGAGAAGGCGCTGTCATTGCTCTCTTCAACTAAATCTCCTTCCTCTCTTAACGCAAGTCCAAGGAGTGAAGACTCTGACCATATTGCCCAAACAAATGCTGCTTCTCGTAAAAGGAACATTCTTCCAACTTGGACACTGAAATTCCAAGTTACTCCAGGAATGGCCCTTGAAGGCTCTCTTGATGATGGCTTTTCTTGGAGAAAATACGGTCAAAAAGGGATTTTTGGTGCCAAACATCCCAGAGGCTATTACCGATGCACACATAGGAACCTCCAAGGTTGTGTTGCAACCAAACAAGTTCAACGTTCCGACGACGATCCGACTATCTTCAAAATCACGTATCGGGGAAACCATACTTGCAGCCAAGTGTCCAACCTTGGTACTACACCTGCAGCACCAGAGTTTCAGCAACAAAACCGTAGAATTGATCAAAATTTGGTGCAAAGCCAACAAACATCACCTGATGCTCTCTTGAACTCATGGGCATCCTTAAGAATCATAACGGAAAACCTTGACACAGTTCATGAACCAATATTGTTCTCACCGTTTAGCTACGATCCCACATCAAGTTACGAGGCTGCAGACCGCATCGAGTCGACATCAACCGTCGACATGAACTTTACAGAGTTTTCGCCTTCGTTTTTGTCCACAACAAGGTGTGGTTCTGGGGTGAGCTATTTCTCTGGGTCCTCAAGTGAGATGAGTGAAGGATTTATTGGGAATCAAAAGTTAGAGTTGCAGCCAAACAAATCTGAGTTACCTGAGATATTTTCATCACCAACTTCAGGTGTGAACTCTCAAACTCTTGGCTTAGACTTCCCATCTGGTGAGCTTGAAATGGAGCCAAGTTTCACTTTTGACAACACAACTTTCTTCTCCTAA 1068 43.91 MENLGEWERKNLQNELLKGKEFARQLRVHLNVRPSTSSMAAASSSSSYDGGELLVQKILSSYEKALSLLSSTKSPSSLNASPRSEDSDHIAQTNAASRKRNILPTWTLKFQVTPGMALEGSLDDGFSWRKYGQKGIFGAKHPRGYYRCTHRNLQGCVATKQVQRSDDDPTIFKITYRGNHTCSQVSNLGTTPAAPEFQQQNRRIDQNLVQSQQTSPDALLNSWASLRIITENLDTVHEPILFSPFSYDPTSSYEAADRIESTSTVDMNFTEFSPSFLSTTRCGSGVSYFSGSSSEMSEGFIGNQKLELQPNKSELPEIFSSPTSGVNSQTLGLDFPSGELEMEPSFTFDNTTFFS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12638900 12640156 - CmoCh18G013290.1 Cmo18g01329 403102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01329 355 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 352 - -
Cmo18g01329 355 SUPERFAMILY WRKY DNA-binding domain 121 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g01329 355 Gene3D WRKY domain 115 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo18g01329 355 SMART WRKY_cls 122 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01329 355 Pfam WRKY DNA -binding domain 123 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01329 355 ProSiteProfiles WRKY domain profile. 117 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo18g01329 355 MobiDBLite consensus disorder prediction 72 96 - -
Cmo18g01329 355 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 352 IPR044810 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01329 - - - cpep:111809956 444.891
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00074 Cmo18g01329 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00175 Cmo-Chr6:955384 Cmo18g01329 Cmo-Chr18:12638900 4.28E-31 dispersed
Cmo08g00125 Cmo-Chr8:642446 Cmo18g01329 Cmo-Chr18:12638900 3.42E-39 dispersed
Cmo16g00604 Cmo-Chr16:2944189 Cmo18g01329 Cmo-Chr18:12638900 1.33E-43 dispersed
Cmo17g00542 Cmo-Chr17:5360801 Cmo18g01329 Cmo-Chr18:12638900 4.19E-41 dispersed
Cmo14g02163 Cmo-Chr14:15533323 Cmo18g01329 Cmo-Chr18:12638900 2.23E-45 wgd
Cmo16g00074 Cmo-Chr16:340544 Cmo18g01329 Cmo-Chr18:12638900 3.49E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g867 . . Bda05g00111 . Bpe03g00242 . Bma10g01288 . Cmo16g00074 Cmo18g01329 . . . . . . Cpe14g00056 Bhi01g01452 Tan01g0147 . . Hepe07g0088 Mch10g0087 . . . . . . . . . . . . . . . . Blo07g00349 . . . . . . . . . . Cma16g00071 Cma18g01300 Car16g00062 Car18g01216 Cpe09g00042 . . . . . . . . Cla05g00948 Cam05g1039 Cec05g1044 Cco05g1038 Clacu05g1030 Cmu05g0980 Cre05g1059 . Csa03g02198 Chy06g01255 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007354 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11571 PF03106 WRKY 4.00E-26 CL0274 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01329 Cmo_Chr18 FPKM 2.982092 4.170429 0.780157 0.901295 8.067256 8.112612 8.606354 1.097641 1.210891 1.233527