Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01330 ATGGGAGTTGTGACCGTTTCAAGCTCTGCAGCACGATCTCCTCTTCGGCTGGGTGCAATATTCTCCAATCACAATTTGTCGAAAAGACCATCGATTGTCGCTTTTAAAGTGGATAAGCACACTGACACTACTCTGGTCTCACCTCACGAGCAAGTGATCCTGCCTGTGGAGAGTAATAGCAGAAACCAGAAAAGATCAGGAAAAACAAGCAAATCTTTGAAGAGAGTTAAAGCTGTCTTTATTGATGAAGCTACTCCCTGCACTTTGGATGTGGATTACTATGAGGCTGCTGCTAAACTTGAAAACATATTCAAGCTTAGCTCTGTGACAGAGGATACCGATGTGGAATGTGAAGATGGCAGACCGAAAAGACGCCAGCAAAGGAGGAAAAAACCAGACAAGAGACCAAGTGATGGCATAGTCAGGAACCATACTAGGAGGATTAAGCGACTAGATCTAGACAAGAGGATAGCATTGAAAAGTAACAAGGAGGGCAAAGCAACTCCTTCATTAAGGAAACAAAAAGATACCGTAAGTGAAGCTGATGAAACTGATGATCTTGTTAGAAACTACCCTGCGTCAACTGATATGGCAAGTTTGGACTGGAAAAAAATGAAGATTCCTCCTGTTCTTAGTTCATCAGAGCATACCCGTTTGTTCAAGTTGGTTCAACCAATGAAGGTGAGGCTTAGGAATTCTGATGTTGAACTTATTCAAGTACAAGAAGAGCTGCAGAAAGAGTTGGGAAGAGAACCAACTGAAGGAGAATTGGTCGATGCAACAAATATGAATGTAATTCAAGTGAGGAGGCAACTGGAGGTTGGTCGTGCTGCCAGAAACAATCTCATCAAGCATAATCTCCGCCTTGTACTGTTTGTGATCAACAAATACTTTGAAGATTTTGCAAGTGGCCCAAAATTTCAAGACCTTTGTCAAGCAGGTGTCAAGGGACTCATGACAGCAATCGACCGCTTTGAGCCAAAGAGGAGATTCCGGCTATCAACTTATGCTTTATTTTGGATAAGACATGCTATTATTCGGTCGATAACTCTCTCAAGCTTCACACGTGTCTCATTTGGACTCGACTCGGTAAGAGTTGATATTCAAAGAGCTAAACTTGAGTTATCATGTGAGCATCATAGATTACCAACAGAGGAAGAGATTATTGCAAAAGTTGGCATCTCGCCTGAGAGGTACCTAGAAGTAATGAGGGCTATAAAACCAGTTTACTCTCTCCATTCTAGGCACTCGACTACATCAGAAGAGTTTATCAATGCGATCACTGATGTAGAAAGTACTGGAGGTGACAACCAGCGGCAACCAGCTCTTCTGAGGCTTGCTCTTGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAAAGATACGGTCTCGACGGGAAAGGAAACCGAACATTAGGTGAGATAGCAGGAAATCTAAATATTTCAAGAGAGATGGTGCGGAAGCACGAAGTTAAAGCTCTGATGAAGCTCAAACATCCTGCAAGAGTGGATTACCTTCGTCGGCATTTAATCTGA 1551 42.81 MGVVTVSSSAARSPLRLGAIFSNHNLSKRPSIVAFKVDKHTDTTLVSPHEQVILPVESNSRNQKRSGKTSKSLKRVKAVFIDEATPCTLDVDYYEAAAKLENIFKLSSVTEDTDVECEDGRPKRRQQRRKKPDKRPSDGIVRNHTRRIKRLDLDKRIALKSNKEGKATPSLRKQKDTVSEADETDDLVRNYPASTDMASLDWKKMKIPPVLSSSEHTRLFKLVQPMKVRLRNSDVELIQVQEELQKELGREPTEGELVDATNMNVIQVRRQLEVGRAARNNLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLMTAIDRFEPKRRFRLSTYALFWIRHAIIRSITLSSFTRVSFGLDSVRVDIQRAKLELSCEHHRLPTEEEIIAKVGISPERYLEVMRAIKPVYSLHSRHSTTSEEFINAITDVESTGGDNQRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRHLI 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12641956 12645142 + CmoCh18G013300.1 Cmo18g01330 403103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01330 516 Gene3D - 438 516 IPR036388 -
Cmo18g01330 516 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 515 - -
Cmo18g01330 516 Gene3D - 355 407 IPR036388 -
Cmo18g01330 516 Gene3D - 227 272 IPR036388 -
Cmo18g01330 516 PRINTS Major sigma-70 factor signature 491 502 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 PRINTS Major sigma-70 factor signature 333 341 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 PRINTS Major sigma-70 factor signature 455 467 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 PRINTS Major sigma-70 factor signature 476 491 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 PRINTS Major sigma-70 factor signature 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 364 420 IPR013324 -
Cmo18g01330 516 Pfam Sigma-70 region 3 366 430 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 Pfam Sigma-70 region 3 237 277 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 MobiDBLite consensus disorder prediction 114 146 - -
Cmo18g01330 516 MobiDBLite consensus disorder prediction 132 146 - -
Cmo18g01330 516 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 515 - -
Cmo18g01330 516 MobiDBLite consensus disorder prediction 159 185 - -
Cmo18g01330 516 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 441 513 IPR013324 -
Cmo18g01330 516 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 278 504 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 Pfam Sigma-70 region 2 282 349 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 193 349 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 Pfam Sigma-70, region 4 451 504 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cmo18g01330 516 Gene3D - 273 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01330 K03093 sigI; RNA polymerase sigma factor - csv:101208584 816.224
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo16g00073 Cmo18g01330 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01330 Cmo-Chr18:12641956 Cmo20g00962 Cmo-Chr20:5246927 7.10E-17 dispersed
Cmo16g00073 Cmo-Chr16:334958 Cmo18g01330 Cmo-Chr18:12641956 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g01330 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 2.615534 0.0 1.753246 0.0 0.0 0.0