Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01333 ATGAAGAAGCATTGTGGTGAAAAGCAAGTAAGAAAAGGAAGGAAGGAGAAGGCGTTATTTGGGATTGATCATGCCGGAGGCTACAATATCAGGAATGTGATTTCTTGGGCTGGACATGTAGGAATAATCAACCGAAGGGTTCAAATCAACAATATCTGGAGGAGCTTGCCTTCAAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACGAGTCTCATGATGATGGTCGATACGGGTGCATCTGAAAATCGCAGGCCGATTGTTGATAAGCATCCAGAGAAAAATGAAGATGGTGGCTATGCCAGTGGAGGGTGGAAAAGTGACGATGGGAAACTTAGTTGGGGGTATTCAAGTATCAGGGGGAAGAGGGCAACCATGGAAGATTTCTTCGATATTAAAATGTCGAAGGTTGATGGTCAAACGGTTTGCCTTTTTGGCATCTTTGATGGCCATGGTGGATCTCGTGCCGCAGAGTTTTTGAAAGACCATCTCTTCGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAAGTAGCTATCAGTGAAACATATCAACGGACCGATGCTGAATTTTTAAGTTTGGAAAAAGAAACTTCAAGGGACGATGGCTCCACTGCTTCAACAGCTTTGCTAGTTGGCAATCATCTCTATGTTGCCAATGTTGGCGATTCGCGTGCTATAATTTCAAAAGGGGGTGAAGCAATCCCTCTTTCTGAGGACCACAAACCAAATAGAACTGACGAGCGGCGGAGAATTGAAAAGGCCGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGTGTGTTAGCAATGTCCCGCGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTTGCAGATCCTGATATTCAGGTGTCCTTGTCATGGTTTACTAAAACTGCCCACCATACTCACCAGGATCTTGAAGTAGACAAGGACGTCGAGTTGCTTATTCTCGCAAGCGATGGTCTTTGGGATGTGGTGCGCAACGAGGATGCAGTACTAGTTGCAGGGAAGGAAGAAGAACCCGAGGCAGCTGCTCGGAAGCTAACCGAAGCAGCATTTACCCGTGGTAGCGCTGACAATATAACGTGCATTGTGGTGAAGTTTCATCATGATAATGCAGATCCTGCTGCCGACTAA 1161 45.82 MKKHCGEKQVRKGRKEKALFGIDHAGGYNIRNVISWAGHVGIINRRVQINNIWRSLPSNLGFVHTWKREYRTSLMMMVDTGASENRRPIVDKHPEKNEDGGYASGGWKSDDGKLSWGYSSIRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKVAISETYQRTDAEFLSLEKETSRDDGSTASTALLVGNHLYVANVGDSRAIISKGGEAIPLSEDHKPNRTDERRRIEKAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQVSLSWFTKTAHHTHQDLEVDKDVELLILASDGLWDVVRNEDAVLVAGKEEEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNADPAAD 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12654519 12658457 - CmoCh18G013330.1 Cmo18g01333 403106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01333 386 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 68 382 - -
Cmo18g01333 386 ProSiteProfiles PPM-type phosphatase domain profile. 115 376 IPR001932 -
Cmo18g01333 386 Pfam Protein phosphatase 2C 119 369 IPR001932 -
Cmo18g01333 386 MobiDBLite consensus disorder prediction 87 106 - -
Cmo18g01333 386 SUPERFAMILY PP2C-like 113 377 IPR036457 -
Cmo18g01333 386 CDD PP2Cc 117 376 IPR001932 -
Cmo18g01333 386 SMART PP2C_SIG_2 113 376 IPR001932 -
Cmo18g01333 386 SMART PP2C_4 105 374 IPR001932 -
Cmo18g01333 386 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169
Cmo18g01333 386 Gene3D - 107 382 IPR036457 -
Cmo18g01333 386 PANTHER ALPHABET, ISOFORM E-RELATED 68 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01333 Cmo-Chr18:12654519 Cmo11g01995 Cmo-Chr11:13667941 2.03E-53 dispersed
Cmo16g00070 Cmo-Chr16:317145 Cmo18g01333 Cmo-Chr18:12654519 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01333 K17506 - csv:101203681 644.039