Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01335 ATGAACTCAGCTCTCCTCAGAGGGTTGGCATCTAGTTCTCATGGAATTAGAGGAATTGAGAAGTCATTGAAATCTTCTTCTTGTAATAATCTCATGCCGCAAGGCTTGCGCTCCGGGAAGAGAATTCTTGATCCACAAGGGCCTTTTCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGGTTGCTGTTTCATTGGATCCTCTGTTCTTTTATGTTCCTGTGATTGATAATAGAAACAAGTGTCTTAGGTTAGATGAGAAAGTGGAGACTGTAGCCTGTATATTGCGATTGTTTACAGATTTATTCTATGTCGTGCATATCGTTTTTCAGTTTCGTACAGGATTTATCGCTCCCTCTTCCCGAGTGTTTGGAAGAGGTGTTTTAATAGAAGATTCTTGGGCAATAGCAATGAGGTATCTGTCATCATACTTTCTAATTGACATATTCTCAGTCCTCCCACTTCCACAGGTGATGATTCTGATAAACATCCATAAAATTAGAGGTTTGAGATCGTGGAATACAGAGAACTTGCTGAAACTTGCTGTATTATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCTCTGTATAAAGAAGTTACAAGGACCTCTGGCATACTCATTGAAACAGCTTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCCAGTCATGTATTTGGGTCAATCTGGTACTTATGTTCCGTAGAACGAGAAGCCCAATGCTGGCATGATGCTTGTAGCAAACATCCTGGCTGTAACCTTACTTCCTTGTATTGTGGCTACAATTACAGTCATGAAGGAAACCTATTCCTCAATGCTTCTTGTCCAATCGAAAAGCCAAATGTAGGAATCTTTAACTTTGGAATATTCCTTCAAGCCCTTCAATCTGATATTGGGGAATCACACTTTCCCAAGAAGTTTCTTCACTGCTTTTGGTGGGGCTTAAGGAATCTAAGCGCTTTGGGTCAAAATCTCACTACAAGTACTTGCAAATGGGAAAACTGCTTTGCCATTTTGATTTGCATCTCTGGCCTAGTGTTGTTTGCGTCTCTCCTTGGCAACCTGCAGATGTGTTGGCGATCCACAAAGACAAGGGTGGAGGAGATGAGAGTGAGAAGGAGAGATGTCGAACAATGGATGTCACATCGTTTACTCCCGGAGAATATAAGGGAGCGAGTTCGAAGGTATGAACATTACATGTGGCAGGATACCAGAGGCGCTGATGAACATAATCTGCTGCATAATCTGCCTAAAGACCTCCATAGAGATATTAAGCGCCATCTTTGCTTGGTTTTGCTTATGCGAGTTCCAATGTTTGAAAAGATGGATGACCAATTGTTGGATGCAATGTGTGCACGTCTAAAGCCCGTGTTGTACACAGAAGAAAGCTGCATTGTTCGGGAAGGCGATCCAGTCGATGAGATGCTCTTCATCATGCGAGGCAAGCTCTTAACCACGACTACAAATGGAGGGAGAACTGGTTTCTTCAACTCTGATATCCTCATGGCTGGTGATTTCTGTGGAGAAGAGTTACTGACTTGGGGTCTAGACCCTCATTCCTCAACCAATCTCCCCATTTCAACTCGAACCGTTCGGTCGCTCACAGAAGTCGAAGCATTTGCCTTTAAACCCGACGACTTGAAAATTGTAGCCACTCAATACCGTAGGCTTCACAGCAAGCAGCTGCGCCAGATTTTCAGATTTTACTCACAGCAATGGAGAACCTGGGCAGCTTGTTTCTTACAAGCAGCATGGAGGTGGCATCAAAGAAAGAAGCTCAGGGAGTGTGTGAAGGAAGAAGAGAGTAGGTTGAAAGTCGTACTGGCTTCCATCGACGAGCGGTCACCGAGTTTAGGCGCCACCATTTATGCATCTAGATTTGCAGCCAACATGCTTCGGGCGAGGAGGCGAAACAGTTGTAGGAAAGCTAGGATGTCCATGCTGCTTCAGAAGCCAGCAGAGGGTGATTTTAGCTTGGAAGACAATAACTCTTAA 2010 43.73 MNSALLRGLASSSHGIRGIEKSLKSSSCNNLMPQGLRSGKRILDPQGPFLQSWNKIFVLSCVVAVSLDPLFFYVPVIDNRNKCLRLDEKVETVACILRLFTDLFYVVHIVFQFRTGFIAPSSRVFGRGVLIEDSWAIAMRYLSSYFLIDIFSVLPLPQVMILINIHKIRGLRSWNTENLLKLAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLASHVFGSIWYLCSVEREAQCWHDACSKHPGCNLTSLYCGYNYSHEGNLFLNASCPIEKPNVGIFNFGIFLQALQSDIGESHFPKKFLHCFWWGLRNLSALGQNLTTSTCKWENCFAILICISGLVLFASLLGNLQMCWRSTKTRVEEMRVRRRDVEQWMSHRLLPENIRERVRRYEHYMWQDTRGADEHNLLHNLPKDLHRDIKRHLCLVLLMRVPMFEKMDDQLLDAMCARLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTTTTNGGRTGFFNSDILMAGDFCGEELLTWGLDPHSSTNLPISTRTVRSLTEVEAFAFKPDDLKIVATQYRRLHSKQLRQIFRFYSQQWRTWAACFLQAAWRWHQRKKLRECVKEEESRLKVVLASIDERSPSLGATIYASRFAANMLRARRRNSCRKARMSMLLQKPAEGDFSLEDNNS 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12659717 12663368 + CmoCh18G013350.1 Cmo18g01335 403108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01335 669 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 663 - -
Cmo18g01335 669 SUPERFAMILY cAMP-binding domain-like 372 568 IPR018490 -
Cmo18g01335 669 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 4 663 - -
Cmo18g01335 669 SUPERFAMILY Voltage-gated potassium channels 44 363 - -
Cmo18g01335 669 ProSiteProfiles cAMP/cGMP binding motif profile. 443 527 IPR000595 -
Cmo18g01335 669 SMART cnmp_10 443 574 IPR000595 -
Cmo18g01335 669 CDD CAP_ED 443 562 IPR000595 -
Cmo18g01335 669 Pfam Cyclic nucleotide-binding domain 464 554 IPR000595 -
Cmo18g01335 669 Gene3D Helix hairpin bin 369 434 - -
Cmo18g01335 669 Gene3D - 56 364 - -
Cmo18g01335 669 Pfam Ion transport protein 51 368 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo18g01335 669 Gene3D Jelly Rolls 441 561 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01335 Cmo-Chr18:12659717 Cmo02g00904 Cmo-Chr2:5575654 0 dispersed
Cmo18g01335 Cmo-Chr18:12659717 Cmo18g01336 Cmo-Chr18:12664245 5.97E-144 tandem
Cmo14g02168 Cmo-Chr14:15560949 Cmo18g01335 Cmo-Chr18:12659717 0 wgd
Cmo16g00069 Cmo-Chr16:313082 Cmo18g01335 Cmo-Chr18:12659717 9.72E-117 wgd
Cmo18g01335 Cmo-Chr18:12659717 Cmo02g01137 Cmo-Chr2:6889071 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01335 K05391 - csv:101214911 1032.71