Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01342 ATGTCGTCTACGCTACTAGAGGTGACCCGGTCTTCGCACGAGGAGGTGGAGCGACTTGAGCGGCTTGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCCGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGACACCATCGTGTCCACCACCGACAAGCTCGTTGAGATTTATGAAGATAAGGATAATGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTTAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGGGTTGTTGATGTTAACGAGGAGGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTCTACAACCAGTATATTAATTCGAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTTTCACAGCCCCAGAAAATCTCTCGCAAACTAAAGAATTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCACTTACTTTTTCCAGCGTACAGAGCCCTTACAAGATCTTGATCGTATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCAATGGATTACCGGTACAATTGAAGGATGGGAGAACACTGTGGAAGATAATGGCCATGATCCTGCCCAGCTTAGTCTTATTGATCTTGACTATTATAGCTCGGTAGAAGAGCTGGTGGAGCTAGGTCCTGAGAGATTGAAGGAGGGGTTGGCAGCATTGGGGCTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTCGCAAAACCGTCCCGGCAACCAGTTCAGAATGGGGCAGCTGCAGCTTCACTACACAATGAAAATTTGAAACAAGTTGCTCTGATGGAAGCAAAAATTGAAAAAATGTGCGATCTTCTGGATGAGACTATCGACAGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAGCAAATTTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTCAAATGTGAGATATGCGGGAACTATAGTTATTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTCAATGAAATTACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAGCAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAA 1527 44.47 MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVEIYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12704567 12712884 + CmoCh18G013420.1 Cmo18g01342 403115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01342 508 Coils Coil 352 379 - -
Cmo18g01342 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 174 IPR031774 -
Cmo18g01342 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Cmo18g01342 508 MobiDBLite consensus disorder prediction 362 381 - -
Cmo18g01342 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cmo18g01342 508 Pfam Replication stress response SDE2 C-terminal 223 303 - -
Cmo18g01342 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Cmo18g01342 508 Pfam Splicing factor SF3a60 binding domain 83 105 IPR021966 -
Cmo18g01342 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00132 Cmo-Chr8:704581 Cmo18g01342 Cmo-Chr18:12704567 1.31E-09 dispersed
Cmo17g00524 Cmo-Chr17:5153910 Cmo18g01342 Cmo-Chr18:12704567 1.04E-08 dispersed
Cmo16g00061 Cmo-Chr16:275550 Cmo18g01342 Cmo-Chr18:12704567 2.59E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01342 K12827 - csv:101205916 917.146