Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01346 ATGGGGTGCCGCCGCCTCAATGAAACCCACCCTGCTGCCAACCCAAGGAGAGGACCACTTTCCGTTCTCTCTCTTCTGTCCCTCATTCTCATCCTCCCCGCCGTCTCCCCCACTTCACTCCTCGGACTCCGAACCTCTTCCGACCCGAAACTCCCTCGAAAACCGACCCGGGCAATTTCCAAGGCCTGTGCCCGAAGTCGGCTCCCGGCTCTGTGCGTGGACTCGCTCCTGGATTTCCCTGGATCTCTGAGCGCCAACGAACGAGATCTCGTTCACATTTCCTTCAATTTGACTCTCCACCATCTCAATGAAGCCCTCTACTCATCCTCCCACCTTTCCTCTCTTCATATGGATCTTCCCCTTCGCTCCGCCTACGACGCCTGTCTTGAACTCCTCGATGATTCCGTCCATGCCCTAACCCGCTCTTTTCACTCCCTTGCGCCGCCTTCCTCCGACAGCCGCCCAACTCCCCTCGCCTCCTCCTCCGATGACGTCATCACCTGGCTCAGCGCCGCCCTCACCAATCAAGACACCTGTACGGACGGATTCTCCCAACTCAGCGGCAATGTTAAAGATCAAATGACTGACAAACTCCACAATTTGTCTGAGCTTGTGAGCAATTGCCTGGCGTTGTTTTCCGGTAGCGTAAGGAACGACTTTTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGCCGAGAAGGAGGATGATTCTGGTAACTTCCCCGGGTGGATGAGCCGGAGAGAGAGGCGGTTGCTGACGTTGCCGGTTGGGGCGTTGCAGGCCGATATTGTGGTTTCGAAGGACGGGAATGGAACGGTAAAGACGATCGCCGAAGCGATAAAAAAGGCACCGGAATTCAGTACCAGAAAGACGATCATCTACGTGATGGCAGGAAGGTACGAGGAGAAAAACCTGAAGGTAGGGAGGAAGAAAACGAATCTGATGTTTGTTGGGGATGGGAAGGGTAAAACTGTGATTTCGGGCGGTAAGAGTATCTTTGACAACGTGACAACCTTTCACACGGCGTCGTTTGCCGTCAGCGGCGCCGGTATCATTTTGAGGGACATGACATTTGTGAATTGGGCCGGACCGGCTCGGCACCAGGCGGTGGCCCTCCGAGTCAGCGCCGATCACGCCGTCGTGTACCGGTGCAACGTCATCGGGTATCAGGACACTCTCTACGTGCATTCGAACCGGCAATTCTTTCGGGAGTGCGACATTTACGGGACGGTGGATTTCATCTTCGGCAATGCGGCGGTGGTGTTTCAAAACTGCAGCATTTACGCCCGAAAGGCGATGGAGCTTCAAAAGAACACAATCACGGCTCAGAACCGGAAGGATCCGAATCAGAACACTGGAATTTCCATCCACGCTTGCCGGATTTTGGCCACCCCCGATCTGGCGTCGTCCTCAACTGCCACCAACCCAACGTATCTGGGTCGTCCCTGGAAACTATACTCTAGAGTTGTGTACATGCAGTCATACATGGGGGGCCACGTGCACCCACGCGGTTGGCTGGAGTGGAACGCCACGTTTGCACTTGACACCTTGTATTACGGTGAGTATATGAACTATGGGCCGGGTGGGGCAGTGGGCCAGAGGGTGACCTGGCCTGGATATCGGGTCATAACGTCGAGGGTGGAGGCAAGTCAGTTCACGGTGGCGCAGTTCATTTACGGCTCGTCGTGGCTACCGTCCACCGGAGTGGCTTTCCTGGGAGGGCTAAATCTGTAA 1746 55.61 MGCRRLNETHPAANPRRGPLSVLSLLSLILILPAVSPTSLLGLRTSSDPKLPRKPTRAISKACARSRLPALCVDSLLDFPGSLSANERDLVHISFNLTLHHLNEALYSSSHLSSLHMDLPLRSAYDACLELLDDSVHALTRSFHSLAPPSSDSRPTPLASSSDDVITWLSAALTNQDTCTDGFSQLSGNVKDQMTDKLHNLSELVSNCLALFSGSVRNDFSGVPIQNKRRLMNAAEKEDDSGNFPGWMSRRERRLLTLPVGALQADIVVSKDGNGTVKTIAEAIKKAPEFSTRKTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGGKSIFDNVTTFHTASFAVSGAGIILRDMTFVNWAGPARHQAVALRVSADHAVVYRCNVIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKAMELQKNTITAQNRKDPNQNTGISIHACRILATPDLASSSTATNPTYLGRPWKLYSRVVYMQSYMGGHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSRVEASQFTVAQFIYGSSWLPSTGVAFLGGLNL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12739181 12741541 + CmoCh18G013460.1 Cmo18g01346 403119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01346 581 Pfam Plant invertase/pectin methylesterase inhibitor 58 211 IPR006501 GO:0004857
Cmo18g01346 581 Gene3D - 260 579 IPR012334 -
Cmo18g01346 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 214 IPR035513 -
Cmo18g01346 581 SUPERFAMILY Pectin lyase-like 262 577 IPR011050 -
Cmo18g01346 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 40 212 IPR006501 GO:0004857
Cmo18g01346 581 PANTHER PECTINESTERASE 17 579 - -
Cmo18g01346 581 SMART PMEI_2 54 211 IPR006501 GO:0004857
Cmo18g01346 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 213 IPR035513 -
Cmo18g01346 581 Pfam Pectinesterase 266 564 IPR000070 GO:0030599|GO:0042545
Cmo18g01346 581 CDD PMEI-like_3 62 213 - -
Cmo18g01346 581 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Cmo18g01346 581 PANTHER PECTINESTERASE 17 579 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01089 Cmo18g01346 CCT
Cmo02g01145 Cmo18g01346 CCT
Cmo16g00058 Cmo18g01346 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01039 Cmo-Chr17:8822967 Cmo18g01346 Cmo-Chr18:12739181 1.12E-157 dispersed
Cmo18g01346 Cmo-Chr18:12739181 Cmo17g00631 Cmo-Chr17:6599797 1.04E-144 dispersed
Cmo15g01089 Cmo-Chr15:7241794 Cmo18g01346 Cmo-Chr18:12739181 0 wgd
Cmo16g00058 Cmo-Chr16:242264 Cmo18g01346 Cmo-Chr18:12739181 0 wgd
Cmo18g01346 Cmo-Chr18:12739181 Cmo02g01145 Cmo-Chr2:6934865 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01346 - - csv:101214987 938.332