Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01351 ATGGCTTTGTTGAGTCCTCGATTGCATAGATTCCGCTTATTAACCAAGCTCCACCAAGCCTCTGCCTCCAAACCCACTAACGCAAATCAGCTCACTGTCAGAAGAAAAACCGGATGCTGCTATGCCATAGCTGTTGATGCTCCATCTTCTTTAACAGATGCTGCGGGAATCAGATGGGGTTCTACCACTTTGCAAGGCTTGCGGGAAGAAATGGAGGACGATGCTGTTGTGCGGTCTGATGGTCTTAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTGTTCCTCCGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCATAACAGCTGTACAAGGTGGTCTGATGTTGAATGGAGGGGATTTTGAAGTGATCAAAGCGGCTTTGGAGAAGGCTTTTGATGACACTGATAAAAGATTACTCCCTTTGCTGGAGGCAGCTGGGAAGGAAGATGAATCTGGTTCCACTGCAACTGTTGCATTCATACGAAATGATGTTATGTTCATTTCACATGTTGGTGACTCTTGTGTTGTGTTGTCACGTTCCGGAGGAGCACAGGTATTGACGAGTTCTCATCGGCCTTATGGAAACAACACCACCTCACTGCAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATCGTTAATGGGAGAATCTGTGGAGACATCTCTGTATCTCGTGCATTTGGTGACATACGATTCAAGACGAAGAAATACGAGATGCTGAGAAAAGGAGCTGAAGAAGGGAGATGGTCTGAAAAGTTTGTTTCTCGTGTACAGTTCAATGGAGATTTGGTAACCGCATCACCAGAAGTTCTTCAGCTTACCCTCGGATCAAATGTCGAGTTTGTACTGATAGCGTCGGATGGCCTATGGGATTACATGAATAGCTCCGAAGCGGTTAAGTTTGTTCGGAATCAATTGAGTCAGCATGGTGATGTTCAGTTAGCTTGTGAAGCCCTCGCACAAGCAGCCTTGGACAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTGGGGCGGACAGATTGGCAGAATTTGCCCCTCCAGCAAGACAACGTCATATTTGAAGTGGCTCAAGCTTTTGGCACGATTGGGGTCGTTTCTTTCGGTATTTGGTGGGCGTCCTCTATTTTCTGTCTTTAA 1167 46.27 MALLSPRLHRFRLLTKLHQASASKPTNANQLTVRRKTGCCYAIAVDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGLNGFLFAAVFDGHGGCSSVKFLREELYKDCITAVQGGLMLNGGDFEVIKAALEKAFDDTDKRLLPLLEAAGKEDESGSTATVAFIRNDVMFISHVGDSCVVLSRSGGAQVLTSSHRPYGNNTTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKYEMLRKGAEEGRWSEKFVSRVQFNGDLVTASPEVLQLTLGSNVEFVLIASDGLWDYMNSSEAVKFVRNQLSQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLQQDNVIFEVAQAFGTIGVVSFGIWWASSIFCL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12755649 12758592 - CmoCh18G013510.1 Cmo18g01351 403124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01351 388 ProSiteProfiles PPM-type phosphatase domain profile. 58 346 IPR001932 -
Cmo18g01351 388 SMART PP2C_4 48 344 IPR001932 -
Cmo18g01351 388 CDD PP2Cc 57 346 IPR001932 -
Cmo18g01351 388 PANTHER PROTEIN PHOSPHATASE 2C 6 383 IPR015655 GO:0004722|GO:0006470
Cmo18g01351 388 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Cmo18g01351 388 SUPERFAMILY PP2C-like 56 347 IPR036457 -
Cmo18g01351 388 Pfam Protein phosphatase 2C 60 339 IPR001932 -
Cmo18g01351 388 PANTHER PROTEIN PHOSPHATASE 2C 57 6 383 - -
Cmo18g01351 388 Gene3D - 57 352 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01351 Cmo-Chr18:12755649 Cmo04g02531 Cmo-Chr4:18596607 1.92E-33 dispersed
Cmo16g00043 Cmo-Chr16:187305 Cmo18g01351 Cmo-Chr18:12755649 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01351 K04457 - csv:101218076 672.544