Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01359 GAGCTGAAGTCCTTAAAAGAAGAAGAAGAAGAAGAAGATTTGAAGACTTTCTTGACGGCGGAGAACCAGGCAGTTGGTTTCTTCCCCATCTGCAGCCACCGGAAACAGATCAAAGGCGCTCAAAAGCAACCAAAAAAGAATTCAGTGACCGGCAGGAATGAAGGTAAGGATTTGCGGGCATTGGAAAATGAAGAAGAGAAGCGCTCACCCTTCCACTTGGTCTCTTTCAAGTCGGTTTCACTTAGAGGCGACTTTCTCCACCACGGGACTCAACCTTTCGATCATCGGAGGGCTTATCCGAATTCCAACAAGAACCTGAATGAGAGGTTGAGCAGGGGCGGTTGTTTTATGAGCACTTATGGGGACCCGCCTGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAACGGTCATGGAGGCGGCGGTGGTGGAAGCGCCAACTCTGGTTCTGGTGGTGGTGGGTTTGGCGCGAACTCGAATGATGGGTGTTGGGGTGGTTCCAGTTTGGGTCCTAATTTTCCAACCCCCAAGGAAATCTCCAAGGGGCTTGATAAGTTTGTAATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGTATCTATCATGAATCGTTGCAAAGGCCTACAGGAGATACGGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTTCTCGCTAAAACCTTGGCACGCTTTGTTAATGTTCCATTTGTTATTGCAGATGCAACTACCCTAACACAGGCGGGATATGTTGGAGAAGACGTGGAGTCTATATTGTACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATAGACGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAACATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTAAACGTGCCTGAGAAAGGTGCAAGAAAGCATCCCAGAGGTGAAAATATCCAGATTGATACTAAGGACATTCTCTTCATATGTGGGGGTGCCTTCATCGACTTAGAAAAAACTATCTCAGAAAGGTTATCTGCATATTCCAAGGGAGGACTTGAATTTTTGTACCCGTACAGTTATACATTTACTTATTACCCTTCTATTGTGTTGGTCAAGCTCCACTTCACAGAAAATTCCTTGAGATTAATTGCAAGAAAGGCAATGTCTAAGAACACTGGAGCACGGGGTTTGCGATCAATATTGGAGAATCTATTGATGGATGCTATGTACGAGATTCCTGATGTCAGAACAGGTGAGGATATAATCGATGCTGTTATCATTGATGAAGAATCCATTGGGTCAGACAGCACGGGTTGTGGCGCTAAAATTCTTTACGGAAAGGGAGCATTGGATCGCTATCTTTCAGGACAAAAGACTACAAGTCAGGGTTCCGAAAAAGAGGCAGAACCCGAAAGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCAGCATGTAA 1602 45.07 ELKSLKEEEEEEDLKTFLTAENQAVGFFPICSHRKQIKGAQKQPKKNSVTGRNEGKDLRALENEEEKRSPFHLVSFKSVSLRGDFLHHGTQPFDHRRAYPNSNKNLNERLSRGGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGHGGGGGGSANSGSGGGGFGANSNDGCWGGSSLGPNFPTPKEISKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERLSAYSKGGLEFLYPYSYTFTYYPSIVLVKLHFTENSLRLIARKAMSKNTGARGLRSILENLLMDAMYEIPDVRTGEDIIDAVIIDEESIGSDSTGCGAKILYGKGALDRYLSGQKTTSQGSEKEAEPESETDLPSVVASSM 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12789652 12800100 + CmoCh18G013590.1 Cmo18g01359 403132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01359 533 MobiDBLite consensus disorder prediction 36 67 - -
Cmo18g01359 533 Gene3D - 415 490 - -
Cmo18g01359 533 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 63 395 - -
Cmo18g01359 533 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 420 531 - -
Cmo18g01359 533 MobiDBLite consensus disorder prediction 505 533 - -
Cmo18g01359 533 CDD AAA 243 354 - -
Cmo18g01359 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 476 IPR027417 -
Cmo18g01359 533 Pfam C-terminal, D2-small domain, of ClpB protein 420 461 IPR019489 -
Cmo18g01359 533 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 420 531 - -
Cmo18g01359 533 Pfam AAA domain (Cdc48 subfamily) 242 392 IPR003959 GO:0005524|GO:0016887
Cmo18g01359 533 MobiDBLite consensus disorder prediction 49 67 - -
Cmo18g01359 533 Gene3D - 174 414 IPR027417 -
Cmo18g01359 533 MobiDBLite consensus disorder prediction 138 159 - -
Cmo18g01359 533 SMART ClpB_D2_small_2 419 481 IPR019489 -
Cmo18g01359 533 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 63 395 - -
Cmo18g01359 533 SMART AAA_5 242 400 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01359 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101215939 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g01359 Cmo-Chr18:12789652 Cmo06g01149 Cmo-Chr6:8802146 1.20E-06 dispersed
Cmo16g00055 Cmo-Chr16:222159 Cmo18g01359 Cmo-Chr18:12789652 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75