Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01361 ATGGATTTAGATAGTATCGAGTGTGTATCATCTTCCGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATTCTTATTCCCATTCTCATCATCATCCCGAGTTGTCGGCAACCAAGCCTCGAAATGGAAACAATAATAGCGCTGTAGCAGGCCCCACTGCCACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGACATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTGGAATTGCCTTGCAGATATTATTCCTTGGGATGCCCAGAAATATTTCCTTACTACAGTAAACTCAAGCACGAAGCATTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTTCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACGGTTTTTCATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGGATGGCCCCAGTGTATATGGCTTTCCTTCGTTTCATGGGCGACGAGAATGAGGCGCGAACCTACAGCTACAGTCTGGAGGTGGGTGGATATGGGCGAAAACTGATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGCCATCGAAAAGTGAGGGATAGCCATGATGGGCTGATGATTCAAAGAAATATGGCTCTGTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGGGTCTGCATACCCAACCTGTGTAGCTAA 996 47.79 MDLDSIECVSSSDGLDEDEIHLHHTLHSYSHSHHHPELSATKPRNGNNNSAVAGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCRYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLMIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12800605 12803284 + CmoCh18G013610.1 Cmo18g01361 403134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01361 331 CDD RING-HC_SIAHs 68 106 - -
Cmo18g01361 331 MobiDBLite consensus disorder prediction 27 58 - -
Cmo18g01361 331 CDD Sina 184 312 - -
Cmo18g01361 331 SUPERFAMILY TRAF domain-like 123 315 - -
Cmo18g01361 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Cmo18g01361 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cmo18g01361 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Cmo18g01361 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo18g01361 331 SUPERFAMILY RING/U-box 58 109 - -
Cmo18g01361 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 122 IPR013083 -
Cmo18g01361 331 MobiDBLite consensus disorder prediction 41 57 - -
Cmo18g01361 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Cmo18g01361 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Cmo18g01361 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00056 Cmo18g01361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00116 Cmo-Chr8:602767 Cmo18g01361 Cmo-Chr18:12800605 2.42E-169 dispersed
Cmo17g00539 Cmo-Chr17:5342452 Cmo18g01361 Cmo-Chr18:12800605 4.86E-180 dispersed
Cmo18g00871 Cmo-Chr18:10014647 Cmo18g01361 Cmo-Chr18:12800605 2.83E-170 dispersed
Cmo18g01361 Cmo-Chr18:12800605 Cmo18g01362 Cmo-Chr18:12803589 0 tandem
Cmo16g00056 Cmo-Chr16:228802 Cmo18g01361 Cmo-Chr18:12800605 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01361 K04506 - csv:101215696 667.922