Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g01361 | ATGGATTTAGATAGTATCGAGTGTGTATCATCTTCCGATGGTCTCGATGAGGATGAGATCCATCTGCATCACACTCTTCATTCTTATTCCCATTCTCATCATCATCCCGAGTTGTCGGCAACCAAGCCTCGAAATGGAAACAATAATAGCGCTGTAGCAGGCCCCACTGCCACTGCGCCGGCCACTAGCGTCCATGAATTGCTCGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACATTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGACATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTGGAATTGCCTTGCAGATATTATTCCTTGGGATGCCCAGAAATATTTCCTTACTACAGTAAACTCAAGCACGAAGCATTGTGCAACTTCAGACCCTACAATTGCCCATATGCTGGCTCGGAATGCTCTGCTGTTGGGGATATTCCTTTCCTTGTTTCCCATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTTAACCATCGCTATGTGAAATCCAACCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACGGTTTTTCATTGTTTCGGTCAATACTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGGATGGCCCCAGTGTATATGGCTTTCCTTCGTTTCATGGGCGACGAGAATGAGGCGCGAACCTACAGCTACAGTCTGGAGGTGGGTGGATATGGGCGAAAACTGATATGGGAGGGCACCCCGCGAAGTATCAGAGATAGCCATCGAAAAGTGAGGGATAGCCATGATGGGCTGATGATTCAAAGAAATATGGCTCTGTTCTTCTCGGGTGGGGATAGGAAGGAACTGAAGCTGAGAGTTACGGGAAGGATATGGAAGGAACAAAACCCGGATGCTGGGGTCTGCATACCCAACCTGTGTAGCTAA | 996 | 47.79 | MDLDSIECVSSSDGLDEDEIHLHHTLHSYSHSHHHPELSATKPRNGNNNSAVAGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCRYYSLGCPEIFPYYSKLKHEALCNFRPYNCPYAGSECSAVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLMIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 12800605 | 12803284 | + | CmoCh18G013610.1 | Cmo18g01361 | 403134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g01361 | 331 | CDD | RING-HC_SIAHs | 68 | 106 | - | - | |
Cmo18g01361 | 331 | MobiDBLite | consensus disorder prediction | 27 | 58 | - | - | |
Cmo18g01361 | 331 | CDD | Sina | 184 | 312 | - | - | |
Cmo18g01361 | 331 | SUPERFAMILY | TRAF domain-like | 123 | 315 | - | - | |
Cmo18g01361 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 176 | IPR013083 | - | |
Cmo18g01361 | 331 | ProSiteProfiles | Zinc finger RING-type profile. | 70 | 106 | IPR001841 | - | |
Cmo18g01361 | 331 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 323 | - | - | |
Cmo18g01361 | 331 | Pfam | Seven in absentia protein family | 112 | 311 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cmo18g01361 | 331 | SUPERFAMILY | RING/U-box | 58 | 109 | - | - | |
Cmo18g01361 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 122 | IPR013083 | - | |
Cmo18g01361 | 331 | MobiDBLite | consensus disorder prediction | 41 | 57 | - | - | |
Cmo18g01361 | 331 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 323 | - | - | |
Cmo18g01361 | 331 | ProSiteProfiles | Zinc finger SIAH-type profile. | 123 | 183 | IPR013010 | GO:0008270 | |
Cmo18g01361 | 331 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 177 | 311 | IPR008974 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo16g00056 | Cmo18g01361 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00116 | Cmo-Chr8:602767 | Cmo18g01361 | Cmo-Chr18:12800605 | 2.42E-169 | dispersed | |
Cmo17g00539 | Cmo-Chr17:5342452 | Cmo18g01361 | Cmo-Chr18:12800605 | 4.86E-180 | dispersed | |
Cmo18g00871 | Cmo-Chr18:10014647 | Cmo18g01361 | Cmo-Chr18:12800605 | 2.83E-170 | dispersed | |
Cmo18g01361 | Cmo-Chr18:12800605 | Cmo18g01362 | Cmo-Chr18:12803589 | 0 | tandem | |
Cmo16g00056 | Cmo-Chr16:228802 | Cmo18g01361 | Cmo-Chr18:12800605 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g01361 | K04506 | - | csv:101215696 | 667.922 |